PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_028875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 61738.9 Da PI: 4.4982 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 146.5 | 2.7e-45 | 175 | 540 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayft.eALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +l+++ +a+++g+++la+a+++++++++s g+ m+Rl +y+ L++ ++ l+++ ++ aa+ +f++++P+ kf+h++a DCAR_028875 175 FHLVMAYGQAIENGHNALAKAVVKHMNQTVSLVGNIMERLLHYVFsVDLKSDYLK--------LECK-------KNFYAAYMAFYQIFPYGKFAHFAA 257 58899999**********************************9640345555554........4444.......457899999*************** PP GRAS 99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N+aIl+av+++ + +Hi Dfd++ GlQW ++++aL ++ +lR+T+++ e + ++ + eet++rL + ++++v+++ + ++++++ +l+ DCAR_028875 258 NSAILKAVHENvKIIHIYDFDLGDGLQWCSMIEALRG---QQRELRLTAIKWTEGEstcipQEWKFEETKRRLIDHSSSCNVDLKVDEMMMHDFIELK 352 ***********8888*******************965...5678******99766688999999***********************98777776665 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk....lvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.e 280 + r ++gE a n++ +l ++ ++ ++++ +e+L+ +++++ + ++++ + +a s++F + l +y al++s+e ++p + e DCAR_028875 353 KIKSRGDNGEWCAFNCMTSLPHMG--RARSRKNVTEFLNgakeIIRHTHSGIIIFGDGDAWEkqkMSSNFTSFLDGHLMHYEALLESIEFNFPVHLkE 448 55556667***************8..44444558999974444688899********99644222667999999999****************98846 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 +r+ +E ++++ ++ ++ e + ++ l e + +G+k ++se+ ++ak ++++ + g +v+ e +++lvl W++ +Lv vS+W+ DCAR_028875 449 ARTLMECLFVAPFASAHAQIQKWEETRECCDL----ESAGLSGLKGRKVSEESLMEAKEMIKEGEsLYGIKVQgEFNNQLVLDWRGTELVKVSCWQ 540 66667777666666666666666644334333....5688999********************9988899999666*******************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.033 | 148 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-43 | 175 | 540 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MFEPAMLQVQ PSLLYSDSLT SFTDDEVRLY EFEFDAQNLG SQDFSSLDTT PQSSPDFCFS 60 IQDLDNMDFQ VDQPGVMLST DHFSTVYDEQ NVIFTGEIDD MLLYSMDGEE SFVDVQQSTL 120 DAEDEWSLNP SMDATDFLMH LPNGGIEVNN HVALIQPSLD LPTEGVEIDL RLVLFHLVMA 180 YGQAIENGHN ALAKAVVKHM NQTVSLVGNI MERLLHYVFS VDLKSDYLKL ECKKNFYAAY 240 MAFYQIFPYG KFAHFAANSA ILKAVHENVK IIHIYDFDLG DGLQWCSMIE ALRGQQRELR 300 LTAIKWTEGE STCIPQEWKF EETKRRLIDH SSSCNVDLKV DEMMMHDFIE LKKIKSRGDN 360 GEWCAFNCMT SLPHMGRARS RKNVTEFLNG AKEIIRHTHS GIIIFGDGDA WEKQKMSSNF 420 TSFLDGHLMH YEALLESIEF NFPVHLKEAR TLMECLFVAP FASAHAQIQK WEETRECCDL 480 ESAGLSGLKG RKVSEESLME AKEMIKEGES LYGIKVQGEF NNQLVLDWRG TELVKVSCWQ 540 S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221126.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A175YJR3 | 0.0 | A0A175YJR3_DAUCS; Uncharacterized protein | ||||
STRING | XP_002526659.1 | 1e-133 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-17 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_028875 |