PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028076

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LSD

Protein Properties

Length: 541aa MW: 59651.5 Da PI: 4.4474

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028076	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40	6.7e-13	467	491	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsY+rGA++V+C++C+tV DCAR_028076 467 CGSCRRLLSYTRGAKYVKCSCCQTV 491 ************************9 PP
2	zf-LSD1	32.8	1.1e-10	505	528	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC +lL+Y +GA +V+Ca+C + DCAR_028076 505 CGGCEVLLMYQFGANAVQCASCRH 528 **********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.3E-17	464	494	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.2E-10	467	491	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.6E-8	502	529	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.8E-9	505	528	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MVEEGEIHGD WEMVEAEPRP PTPPTPCLPF SPADIHMGIE QLEVQDEEEE DGPPPGWNFI 60 PQLQSNKGDE NMDDDEEGPP PGWDFKPKPE QLTEHENKDI KEAEQPPDWH FVSLQEPEIG 120 SHHDDIEEGP PPGWPSVLPA QQNMMAEKQE SKVGSELGSH SVHSPQIRTR SELEALKAKE 180 IGIQHGKSSI DLLQPIVEYK QDTEEAQPGL NSILLPQPQV TSPMVPPSPL QLSDTDRKSE 240 QEVADEEEPP PGWNSTEKNK FNSEHKDTKE GETRVRTSPA KTEIELEKQD ILEGADEERA 300 PPGWYSIDKD IISCEHQDIK DGASLSSTSS AKLEIKIEKQ DIIDEGPPPG WNLMPPPQSK 360 SGSENQAIKG EGPSRGLHLG PPPPKLDSIQ QEIGEERPQS MSNSLCQQSK VGHRQQEVKE 420 ERPHPGSNCM PPPSPQIRPP MPVNPMSTSA RRPPPSGNHS EMGQMVCGSC RRLLSYTRGA 480 KYVKCSCCQT VNLVLEAHQV GQVKCGGCEV LLMYQFGANA VQCASCRHLT EIVVCNATLL 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MVEEGEIHGD WEMVEAEPRP PTPPTPCLPF SPADIHMGIE QLEVQDEEEE DGPPPGWNFI  60
PQLQSNKGDE NMDDDEEGPP PGWDFKPKPE QLTEHENKDI KEAEQPPDWH FVSLQEPEIG  120
SHHDDIEEGP PPGWPSVLPA QQNMMAEKQE SKVGSELGSH SVHSPQIRTR SELEALKAKE  180
IGIQHGKSSI DLLQPIVEYK QDTEEAQPGL NSILLPQPQV TSPMVPPSPL QLSDTDRKSE  240
QEVADEEEPP PGWNSTEKNK FNSEHKDTKE GETRVRTSPA KTEIELEKQD ILEGADEERA  300
PPGWYSIDKD IISCEHQDIK DGASLSSTSS AKLEIKIEKQ DIIDEGPPPG WNLMPPPQSK  360
SGSENQAIKG EGPSRGLHLG PPPPKLDSIQ QEIGEERPQS MSNSLCQQSK VGHRQQEVKE  420
ERPHPGSNCM PPPSPQIRPP MPVNPMSTSA RRPPPSGNHS EMGQMVCGSC RRLLSYTRGA  480
KYVKCSCCQT VNLVLEAHQV GQVKCGGCEV LLMYQFGANA VQCASCRHLT EIVVCNATLL  540
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223630.1	0.0	PREDICTED: uncharacterized protein DDB_G0284459-like isoform X1
TrEMBL	A0A175YNV5	0.0	A0A175YNV5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-31	lsd one like 2

Link Out ? help Back to Top
Phytozome	DCAR_028076