PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027766

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 231aa MW: 25329.4 Da PI: 6.7445

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027766	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	7.9e-19	57	108	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g+ DCAR_027766 57 PVYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAAIAIKGH 108 68***888.******843...6********************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.0E-13	57	108	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	58	121	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.3	58	115	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-31	58	116	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-21	58	116	IPR016177	DNA-binding domain
PRINTS	PR00367	7.7E-10	59	70	IPR001471	AP2/ERF domain
CDD	cd00018	4.70E-31	59	117	No hit	No description
PRINTS	PR00367	7.7E-10	81	97	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MPPPHCVMKE KISIPSSQHS EKDLVTRRSG KRSFQNASDE MIKKSEKCSS ASDGKHPVYR 60 GVRIRSWGKW VSEIREPRKK SRIWLGTFAT PEMAARAHDV AAIAIKGHSA FLNFPELAHQ 120 LPQPASKSPK DIQAAAAQAA AMNNVPSHEA EAEAELSGAE ATTTTITSDS SGESSSTSPI 180 SHIEDPFLDL PDLYLNLGHK IGHSIHEFPW SLARAETVDS ELWLDEPFLW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-17	56	115	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	32	RRSGKRS

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222023.1	1e-168	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	1e-46	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
Swissprot	Q9ZQP3	1e-47	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A175YPR2	1e-168	A0A175YPR2_DAUCS; Uncharacterized protein
STRING	EOY24281	8e-59	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	DCAR_027766

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]