PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 39126.1 Da PI: 5.803 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.6e-29 | 125 | 184 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++ g+++prsYYrCt++ C ++k+v+rs++dp+++eitY+g+H++ DCAR_027713 125 EDGYSWRKYGQKDILGATHPRSYYRCTYRntqMCYATKQVQRSDNDPTIFEITYKGKHTC 184 8***************************98889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.343 | 119 | 182 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-27 | 121 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-25 | 124 | 184 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-39 | 124 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 125 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGSACNWEKS TIANELIQGM EVARQLKFHL SSSTSSPDTH QRLLQRILSS YDNALLLLNW 60 SESSAVQAQA VPAMVSLPQS PISTEGSPGE FKDHHQDVSK KRKALPTWKD HVRIYFENGV 120 ESSAEDGYSW RKYGQKDILG ATHPRSYYRC TYRNTQMCYA TKQVQRSDND PTIFEITYKG 180 KHTCLQANNS VPPATPENQE LKHESHYHYH HHNQEPTNDV LINFRENLRV ETEDLHKKEA 240 SDSFSFPQGI ENLTGEAQLS SFSQLVNENV MGNFSPSFIS PATSGSSYFS VSPYQMNSFG 300 QFPESDHNEI ISANTSTSNS PILDLDFQID HADLDLKFPF DTPGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 120 | 184 | 4 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220650.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A175YMN9 | 0.0 | A0A175YMN9_DAUCS; Uncharacterized protein | ||||
STRING | XP_002509941.1 | 1e-114 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 4e-63 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027713 |