PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 238aa MW: 26631.1 Da PI: 8.844 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 6e-19 | 164 | 198 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C++ kTp+WR gp g+ktLCnaCG++y++ +l DCAR_027367 164 CQHCQAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 198 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.0E-17 | 158 | 208 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.097 | 158 | 194 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.9E-15 | 160 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.7E-15 | 161 | 196 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.81E-14 | 163 | 220 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 164 | 189 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 164 | 198 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MESLGNPPFL LMDGDDIFNF PLDGEDGIDP GRRFSELEFA EEELEWLSNK DAFPAVETGL 60 DIFTPHQNLQ SPISVLENSS SSSNSNGSGT MSCCGALPVP ISFPVHYPVR ARSKRRRRRR 120 REFPEFPVAV QQAGWWNQVN VRNVKQDFPK ALPITGGSSI GRRCQHCQAE KTPQWRAGPM 180 GPKTLCNACG VRYKSGRLVP EYRPANSPTF SSQVHSNSHR KIMEMRRHTL GDNMMVK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 120 | RSKRRRRRRR |
2 | 113 | 118 | KRRRRR |
3 | 114 | 120 | RRRRRRR |
4 | 114 | 121 | RRRRRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017220038.1 | 1e-178 | PREDICTED: GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 3e-42 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A175YQ01 | 1e-177 | A0A175YQ01_DAUCS; Uncharacterized protein | ||||
STRING | EOY05429 | 1e-67 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-40 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027367 |