PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 28189.9 Da PI: 9.8949 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.3e-05 | 76 | 110 | 3 | 39 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKls 39 r h Er RR++ ++ + +L ++lP++ ++ Kls DCAR_027276 76 RQHVLKERMRREEQRHNYMRLHSMLPSR--TKTDKLS 110 67999**********************7..3666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.22E-7 | 72 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.343 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-4 | 76 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEHLLDESDF TWLREVMFWA QPSAFVSYTQ HKLDNTPAFE SNNTNIKKRM REFLISTTVS 60 TSSAQRNEVL EETRSRQHVL KERMRREEQR HNYMRLHSML PSRTKTDKLS ITVTAAREVE 120 GLKKRREELK RHNSEMNKML RAREGSSDQG SEMEEAKIRI NVEHPSSGID SMLEVLKCLK 180 QTDSSTRLVQ SQFLPQQFSA VLGVETKVGA AEIESAIHRK LVQTEQRFRI NNKEASYKDG 240 TF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 85 | RQHVLKERMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221683.1 | 1e-180 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A175YR53 | 1e-179 | A0A175YR53_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12463 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 2e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027276 |