PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28466.4 Da PI: 9.2038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2e-05 | 76 | 116 | 1 | 46 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLek 46 r+r h Er RR++ ++ + +L llP+ +K +K +i DCAR_027275 76 RCRRHMLSERMRREKQKNNYMRLHALLPSG-----TKRDKHSIILT 116 6788999**********************6.....45555555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-9 | 71 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.35E-6 | 73 | 126 | No hit | No description |
PROSITE profile | PS50888 | 10.766 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-6 | 79 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEHFFAYHSQ PADFSWPQEE VLAQPSAFVS YTQQSVNEAP AVGSGGVNVK KRMREFLMRS 60 MSTSDREMCD YSEKERCRRH MLSERMRREK QKNNYMRLHA LLPSGTKRDK HSIILTAAQE 120 VQELKKCREE LRRQQKEMLG AIEGSRGEEE SEMEQAKIRI DVARPSSGVD SMLEVLKCLK 180 HTNSNVRLIQ SKFLPQQFSA VLGIETKVGA AEVEQEVHRT LFQVEKKFRH SRVEPSHTHG 240 SFLFHS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221908.1 | 0.0 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A175YPB4 | 0.0 | A0A175YPB4_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12463 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 2e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027275 |