PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027267
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 279aa    MW: 30516.5 Da    PI: 5.8417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027267genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09128172554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+ l+P++      K +Ka++L +  eY+k L
  DCAR_027267 128 HSIAERLRRERIAERMRALQALVPSC-----NKSDKAAMLDEILEYVKFL 172
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.21E-10121177No hitNo description
SuperFamilySSF474592.22E-15121183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15125183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7128172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAHNPPPDGY SDDFLDQILA IPSYNAALSN TDSTLTPSHL STAGASQQPL FPLGLSLDNS  60
HRERGSINMG NMFPVFDHVQ PHSVRQAAPQ MHQPFQNQTT TSTAVTVPHP PNMRPRVRAR  120
RGQATDPHSI AERLRRERIA ERMRALQALV PSCNKSDKAA MLDEILEYVK FLRLQVKVLS  180
MSRLGGASAV AQLVSDVPLQ SVEGGMTENG GDRPVWENWS DDDMEQEVAK LMEEDVGSAM  240
QFLQSKALCI MPISLASLIY PTNQSDVSLV KPEPPAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220267.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-70UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A175YQA30.0A0A175YQA3_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]