PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_027002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 565aa MW: 63522.6 Da PI: 5.5906 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 288.2 | 2.2e-88 | 191 | 562 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkfs 94 v Ll++Ae v +++l++a++lL + se a dg+p+qRl+ yf+ AL +++ + + e++k+l+ + + + +e+++++k f + P+ ++s DCAR_027002 191 VGNLLAAAEKVGQKKLRRARKLLRKCSEWACDDGNPVQRLVYYFAAALCEKIDQhIGREMSKSLEKKVEL-LDFEEVVMSQKSaniaFLKEVPFAQVS 287 5689************************************************996667777777444332.22333333333334459999******* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 ++t qaI e v++++rvHiiDf i++G + LlqaLa+R+e p +lRiT+vg +s+e+leetg+rL fAe++++pf+fn++++ ++ dl+ DCAR_027002 288 QFTGVQAIIEHVAEATRVHIIDFFIMNGSNCIVLLQALAARDEHPIeHLRITAVGT---KSQERLEETGKRLMTFAESVNLPFSFNLVMVADMLDLNE 382 ******************************************66655*********...68************************************* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 ++++ +E+++V++++ +l ++s le v++++++++P v+v++e+e +hns+ F++rf+eal yy a+fd++e + r + +r vE DCAR_027002 383 GLFKLNAEEVVVVQSSYLFSTLISKSDRLEY----VMRVIRDINPSVMVMIENEGNHNSSVFVKRFVEALFYYGAFFDCIEDCMERSNPDRLLVELIH 476 *****************88888866666666....*************************************************************** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++i+n+v + g++r+ r+ ++ Wre ++++ + +++ls++ a+l+++k++ + +++ + ++l++gWk+ p+ s+SaW+ DCAR_027002 477 FSPAIQNIVVADGEDRITRQVDMSVWREFFKRFMMVELELSKSSLYHARLIVNKFAcGSSCTLDRDGKCLIIGWKGTPIHSLSAWK 562 ********************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.299 | 164 | 541 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-86 | 191 | 562 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MSNMPSKLSN SRNIVELYSS SEDLDLDLES EQCGKRKKQI NLNAAGPANS SGFGGFEDLY 60 FDAGSPQVQS CQVQSCQDEI VEVGMVKFED SELGESEKQK AEKFNLDSLG LLKNYGYRFR 120 HLKGEKIEVA GCGVERDKGS ERRVSTDAII RQAGESFINS SVKRCNGFSD ASHTNKLVGL 180 SDKEAKDVEL VGNLLAAAEK VGQKKLRRAR KLLRKCSEWA CDDGNPVQRL VYYFAAALCE 240 KIDQHIGREM SKSLEKKVEL LDFEEVVMSQ KSANIAFLKE VPFAQVSQFT GVQAIIEHVA 300 EATRVHIIDF FIMNGSNCIV LLQALAARDE HPIEHLRITA VGTKSQERLE ETGKRLMTFA 360 ESVNLPFSFN LVMVADMLDL NEGLFKLNAE EVVVVQSSYL FSTLISKSDR LEYVMRVIRD 420 INPSVMVMIE NEGNHNSSVF VKRFVEALFY YGAFFDCIED CMERSNPDRL LVELIHFSPA 480 IQNIVVADGE DRITRQVDMS VWREFFKRFM MVELELSKSS LYHARLIVNK FACGSSCTLD 540 RDGKCLIIGW KGTPIHSLSA WKFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-39 | 220 | 562 | 33 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221732.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
TrEMBL | A0A175YPE0 | 0.0 | A0A175YPE0_DAUCS; Uncharacterized protein | ||||
STRING | evm.model.supercontig_9.72 | 1e-164 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-55 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_027002 |