PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_026212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 522aa MW: 57930.1 Da PI: 6.7055 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 362 | 8.7e-111 | 149 | 520 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv+lL+ cAeav+ +d + a+ lLa+++ a g+++qR+a++f+++L rl+ ++ + l++ +t+ + s+++ al l +ev+P ++f+h+ DCAR_026212 149 LVQLLVLCAEAVACRDRSHASVLLAEVRADALVFGTSFQRVASCFVQGLTDRLTFVQPPGTAGLTAAATNIIDiaSEKKEEALDLVYEVCPHIQFGHF 246 689****************************************************888888888888887666667888889999************* PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN Ilea+ege+ vH++D+++s +G QW +L+++La+R+++pp +RiTgvg e+ + +g L+ +A++lg+++ef++ v+++ledl DCAR_026212 247 VANLSILEAFEGENFVHVVDLGMSlglrHGQQWRNLIRSLANRTGQPPcCVRITGVGL----CVEKFQIIGTELKAYARSLGINLEFSA-VESSLEDL 339 ********************98763333788*************988889********....***************************.799***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 ++e+++++++E+la+n++lqlh +++es + ++Lk++ +lsPk++++veq+++hn++ Fl rfleal+yysa+fdsl+a lp+ + r+k+E+ DCAR_026212 340 KPEHIKLRKNEVLAINSILQLHCVVKESRGALN---AFLKVIHELSPKILILVEQDSSHNGPFFLGRFLEALHYYSAIFDSLDAMLPKYDTRRAKIEQ 434 *************************88887777...9************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++ei+n+v+ceg r+erhe++ +Wr+r+++aGF+p+p k+ +qak l k++ +gy++ ee+g+lvlgWk++p+v++S+W+ DCAR_026212 435 FYFAEEIKNIVSCEGPGRIERHERVDQWRRRMSRAGFQPAPG--KMIAQAKDWLGKHEfCEGYTIVEEKGCLVLGWKSKPIVAASCWK 520 ***************************************995..6788***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.793 | 123 | 501 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-108 | 149 | 520 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MAYRFLAHAL YDNEQNVQIN GLDSRSSAMA CYPFPYLHTL NNVASILNPG LSDETSSSKR 60 LKRTTSMGEI LGNTYSSFCS NDSFGSTFSR RSSTSSLNSL PGLHIREHIN AYTQRYLAAE 120 CVEDAASAIV GSDYDGETKE DGVTDEMRLV QLLVLCAEAV ACRDRSHASV LLAEVRADAL 180 VFGTSFQRVA SCFVQGLTDR LTFVQPPGTA GLTAAATNII DIASEKKEEA LDLVYEVCPH 240 IQFGHFVANL SILEAFEGEN FVHVVDLGMS LGLRHGQQWR NLIRSLANRT GQPPCCVRIT 300 GVGLCVEKFQ IIGTELKAYA RSLGINLEFS AVESSLEDLK PEHIKLRKNE VLAINSILQL 360 HCVVKESRGA LNAFLKVIHE LSPKILILVE QDSSHNGPFF LGRFLEALHY YSAIFDSLDA 420 MLPKYDTRRA KIEQFYFAEE IKNIVSCEGP GRIERHERVD QWRRRMSRAG FQPAPGKMIA 480 QAKDWLGKHE FCEGYTIVEE KGCLVLGWKS KPIVAASCWK C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-63 | 156 | 519 | 25 | 377 | Protein SCARECROW |
5b3h_D | 4e-63 | 156 | 519 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216647.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A164UNM1 | 0.0 | A0A164UNM1_DAUCS; Uncharacterized protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-80 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_026212 |