PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026063

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 358aa MW: 40668.9 Da PI: 7.5709

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026063	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.9	1.3e-55	14	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++k+ePwdLp+++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++ DCAR_026063 14 LPPGFRFHPTDEELITHYLSKKVLDSNFSA-TAIGEVDMNKIEPWDLPRRAKMGEKEWYFFCVRDKKYPTGLRTNRATTAGYWKATGKDKEIFR-GKS 109 79************************99.88***********99999*************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgek++Wv+heyrle DCAR_026063 110 LVGMKKTLVFYRGRAPKGEKSNWVIHEYRLE 140 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	11	164	IPR003441	NAC domain
PROSITE profile	PS51005	59.225	14	164	IPR003441	NAC domain
Pfam	PF02365	1.9E-28	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MENFGGKEDE QVFLPPGFRF HPTDEELITH YLSKKVLDSN FSATAIGEVD MNKIEPWDLP 60 RRAKMGEKEW YFFCVRDKKY PTGLRTNRAT TAGYWKATGK DKEIFRGKSL VGMKKTLVFY 120 RGRAPKGEKS NWVIHEYRLE GRFSIHNLPK TAKNEWVICR VFKKTSGGKK IHISGLLSSN 180 TIDDEMIPDV MPQLLDSSTS DRLTPNVTES LHVPCFSNAI DIQSSQKDLF SYFNNNPGYP 240 MSSNTSEFFQ RFSHPNLYPG VQSAQIPVNF QYPSTMAMQD QSILRGLFEN YGSNTRQNLK 300 TEKEMVSVSQ ETGLSTEVNT EISSVVSNLD MGRRTFDDQQ APTASVGALE YDCLWSY*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MENFGGKEDE QVFLPPGFRF HPTDEELITH YLSKKVLDSN FSATAIGEVD MNKIEPWDLP  60
RRAKMGEKEW YFFCVRDKKY PTGLRTNRAT TAGYWKATGK DKEIFRGKSL VGMKKTLVFY  120
RGRAPKGEKS NWVIHEYRLE GRFSIHNLPK TAKNEWVICR VFKKTSGGKK IHISGLLSSN  180
TIDDEMIPDV MPQLLDSSTS DRLTPNVTES LHVPCFSNAI DIQSSQKDLF SYFNNNPGYP  240
MSSNTSEFFQ RFSHPNLYPG VQSAQIPVNF QYPSTMAMQD QSILRGLFEN YGSNTRQNLK  300
TEKEMVSVSQ ETGLSTEVNT EISSVVSNLD MGRRTFDDQQ APTASVGALE YDCLWSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	11	170	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	11	170	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	11	170	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	11	170	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	11	170	17	174	NAC domain-containing protein 19
3swm_B	1e-54	11	170	17	174	NAC domain-containing protein 19
3swm_C	1e-54	11	170	17	174	NAC domain-containing protein 19
3swm_D	1e-54	11	170	17	174	NAC domain-containing protein 19
3swp_A	1e-54	11	170	17	174	NAC domain-containing protein 19
3swp_B	1e-54	11	170	17	174	NAC domain-containing protein 19
3swp_C	1e-54	11	170	17	174	NAC domain-containing protein 19
3swp_D	1e-54	11	170	17	174	NAC domain-containing protein 19
4dul_A	1e-54	11	170	14	171	NAC domain-containing protein 19
4dul_B	1e-54	11	170	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216531.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-141	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A164UK87	0.0	A0A164UK87_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g06400.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-144	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	DCAR_026063

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]