PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025986
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 267aa    MW: 29343.2 Da    PI: 6.7792
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025986genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17186220135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+C + kTp+WR gp g ktLCnaCG+++++ +l
  DCAR_025986 186 CSHCLVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 220
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.253180216IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-15180234IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13181244No hitNo description
Gene3DG3DSA:3.30.50.108.7E-14184218IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.31E-14185233No hitNo description
PROSITE patternPS003440186211IPR000679Zinc finger, GATA-type
PfamPF003202.1E-15186220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MESVNAALKN SLTSPEIGFW DDVCLSPVVK NGVVSEDDYV FVDDLLDFSK AEQIENEHVN  60
DDKVQNDGVL VSDVKREIFE APPVPVQENE LSVPVDELAE LEWLSNFVDD STPGYSLTLP  120
PPQKPPVKLA GPRKTGVRVR PLSYSTTSSS SSSRTFVMCG DVTHSAESLM KPPLKKPKTQ  180
HGERRCSHCL VQKTPQWRTG PLGAKTLCNA CGVRFKSGRL LPEYRPAVSP TFSSEKHSNS  240
HRKVMEMRRK KEGDGVGGFG KAVETF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218902.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD389e-47GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A164UI680.0A0A164UI68_DAUCS; Uncharacterized protein
STRINGXP_008357175.13e-55(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-43GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]