PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025823
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 537aa    MW: 58666.4 Da    PI: 7.2766
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025823genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.84.4e-24176220145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRC r++++++k+CErH++rgr+rsrk++e+
  DCAR_025823 176 DPEPGRCRRTDGKKWRCAREAVPDQKYCERHINRGRHRSRKPVES 220
                  79****************************************986 PP
2QLQ53.47.7e-19107142237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +FT++Q+  L+ Q+l+yKy++an+PvP++Ll++i+k
  DCAR_025823 107 PFTPSQWLDLELQALIYKYIVANVPVPSHLLFQIRK 142
                  9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-10106142IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-13107141IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.113107142IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.463176220IPR014977WRC domain
PfamPF088796.0E-21177219IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDLGLMSFNG FGDDNASSSR SVLQRSTHSL LANDSSPASF SISFTSPVPA SNAAAYQDFS  60
RQGTHMCVCV CVCVWVYFLV LVAMFMWYGC GGSTGGMDSP FTRCREPFTP SQWLDLELQA  120
LIYKYIVANV PVPSHLLFQI RKSLNPFLYA GSFTGSYAPK SFGWGTFHLG LSGSNDPEPG  180
RCRRTDGKKW RCAREAVPDQ KYCERHINRG RHRSRKPVES RKGQVVPGTT HITEVAVDST  240
PSETVMSGPG TSKSLSLPQQ QSKILQSTAA NAYANALNRV QDTQGQSIIS PTVDLKLKDT  300
VPSIRQHHVR TEESSLQEFG LVSSTSLLYS SDKDSYNDPR NRDAILSFSE QETQNQQPLH  360
RFIDDWPKNP SDHLNVVWPD EFKSDWTQLS MSIPKNSSTF SSCSNSPREK FSLAPLSLPC  420
ELDNVNMSLA LRNDPSEKQT SWNPVTWENS MGGPLGEALN STSNSVEASR SSLMLNLRNS  480
EVWDGHSQLG SSPTGVLQKT TFVSVSNSSA GSSPRAGNKA GGSSLPDDVP CSIPSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754415e-49HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755145e-49HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215907.10.0PREDICTED: growth-regulating factor 2
TrEMBLA0A164UDH30.0A0A164UDH3_DAUCS; Uncharacterized protein
STRINGVIT_00s0494g00010.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-85growth-regulating factor 2