PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025537
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 352aa    MW: 39151.8 Da    PI: 4.6854
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025537genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.75.2e-0752101855
          AP2   8 wdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++++gr++A+++d  ++n  ++k+ + g ++ +  Aa a++ a++k++g
  DCAR_025537  52 QHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEAAAAHAYDLAALKYWG 101
                  6899**********99998888888888*****99*************98 PP
2AP251.72.2e-16144195155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a+++a+ +++g
  DCAR_025537 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDKAAIEYRG 195
                  89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.6236109IPR001471AP2/ERF domain
SMARTSM003801.3E-952115IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1052110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-953110IPR001471AP2/ERF domain
CDDcd000184.82E-25144205No hitNo description
SuperFamilySSF541711.31E-17144205IPR016177DNA-binding domain
PfamPF008477.1E-12144195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-18145204IPR001471AP2/ERF domain
SMARTSM003808.9E-25145209IPR001471AP2/ERF domain
PROSITE profilePS5103218.149145203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLAIVAAAAQ GATARLPRQN GLEKASRGTP LPSAALFTGV SQGQSNTNIS LQHRWTGRYE  60
AHLWDKNCWN ESQSKKGRQG AYDDEAAAAH AYDLAALKYW GQDTILNFPL ATYEDEVKEM  120
DGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDKAA IEYRGLNAVT NFDLSRYVDW IQPDQTNSNS DPWIQPDQIN SNSDPIQQFP  240
NPEAEVTSLE NVIITKQECP TSSPENSSYN VPQNSDNNTS SYNIPQNSDN NTATSSEFSE  300
MLEGTSSAPE SDVPRRSFPD HIQTDFGCHD LEIFGDLVPF TSSMYELDMI M*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216055.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN46e-91AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A161ZMA70.0A0A161ZMA7_DAUCS; Uncharacterized protein
STRINGcassava4.1_025233m1e-122(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-82AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]