PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025485
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 281aa    MW: 31544.3 Da    PI: 8.9096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025485genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06106125625
                  -SGGGGTS.--TTTTT-SS-S CS
      zf-CCCH   6 CrffartG.tCkyGdrCkFaH 25 
                  C+ ++ +G  C+yG+rC+F H
  DCAR_025485 106 CK-WYTSGkPCPYGNRCRFPH 125
                  88.999999**********76 PP
2zf-CCCH30.75.3e-10188213126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+++    +C+yG++C FaHg
  DCAR_025485 188 WKTRLCNRWETVKECPYGSKCFFAHG 213
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0185985IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4885986IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-56084IPR000571Zinc finger, CCCH-type
SMARTSM003560.0093101127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981105128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6105126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5106135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13183217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8184217IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117187215IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7188213IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENIEQARDI RGRFRTDDEP FGVGGNADHC RSFKRPRVSE NIRDSRLPNL NNTSRAGISF  60
KSQPCCDFRT RGCSYGTNCR YSHEFRGIDQ GELVAKEIGL GYNNVCKWYT SGKPCPYGNR  120
CRFPHEDVKN GVDEFRKSHA ISIAGYNQGL SLKQDNRLGG SGFGAKQDNT PVDVSLRANQ  180
AHQRHMSWKT RLCNRWETVK ECPYGSKCFF AHGLAELLPG PSARNKNQSL RSVAGIAKDE  240
KNGVAQVEGK EECSIRWKTV NKLVGIYADW IEDMPSQPDM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218952.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A161ZPS20.0A0A161ZPS2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-22C3H family protein