PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025382
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 331aa    MW: 37670.3 Da    PI: 6.2921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025382genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.31.2e-5631291129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL +k+++k+++   +i+evd+++vePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat+sgyWkatgkdke+++ +++
  DCAR_025382   3 LPPGFRFHPTDEELITHYLSPKIHNKSFSS-AAIAEVDLNNVEPWELPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATESGYWKATGKDKEIFK-GKT 98 
                  79*************************999.78***************888999****************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kk+Lvfykgrap+g kt+Wvmheyrle
  DCAR_025382  99 LVGMKKILVFYKGRAPRGDKTNWVMHEYRLE 129
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-632153IPR003441NAC domain
PROSITE profilePS5100558.7023153IPR003441NAC domain
PfamPF023654.2E-304128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELPPGFRFH PTDEELITHY LSPKIHNKSF SSAAIAEVDL NNVEPWELPW KAKMGEKEWY  60
FFCVRDKKYP TGLRTNRATE SGYWKATGKD KEIFKGKTLV GMKKILVFYK GRAPRGDKTN  120
WVMHEYRLEG KHSMDYSSKT SRNEWVISRI FHKSAGGVKS HIEALAQHGN CSEEVQQQVA  180
SNLPPLLDVS RTLQAEAVPV SKETSYSSQI EDIKFSDSMT EASVMQSSFY SYPSIPIINP  240
HLSSPIPLQF PEYYAVQDES SMRYIMEYNG EVTEMKQTCK TEFSQDTNGG MSTDVSSVVS  300
NHFDTRSYED QEYHPISSSG PVDLGCLWNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-53115918174NAC domain-containing protein 19
3swm_B3e-53115918174NAC domain-containing protein 19
3swm_C3e-53115918174NAC domain-containing protein 19
3swm_D3e-53115918174NAC domain-containing protein 19
3swp_A3e-53115918174NAC domain-containing protein 19
3swp_B3e-53115918174NAC domain-containing protein 19
3swp_C3e-53115918174NAC domain-containing protein 19
3swp_D3e-53115918174NAC domain-containing protein 19
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217698.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLR31e-105NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A164U1H30.0A0A164U1H3_DAUCS; Uncharacterized protein
STRINGVIT_14s0108g01070.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-105NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]