PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 32440.6 Da PI: 5.3512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 114 | 165 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +g+W+AeIrd r r++lg+fgtaeeAa +++a+ +++g+ DCAR_025238 114 PKYRGVRLRP-WGKWAAEIRDsS-----RgGRIWLGTFGTAEEAAVVYDKAAIEIRGA 165 79********.**********33.....349************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.11E-31 | 114 | 171 | No hit | No description |
Pfam | PF00847 | 2.4E-12 | 114 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 115 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.549 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-34 | 115 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 115 | 171 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.4E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MNHSNDLSPV TYKVHRSFTS KQLSSPPAKW GPKDFSRVVR ISFTDSDATD SSSDDDVPNE 60 HITRRKIKKK YISEIKIAAF SEKPPENSNG VVKKKKLERP TKPNVKKLVP PNRPKYRGVR 120 LRPWGKWAAE IRDSSRGGRI WLGTFGTAEE AAVVYDKAAI EIRGANALTN FLKLPENIPA 180 PEVLPEVECK LEPEVESPTS VFRFRGKGEV DNGDWKPAEE VELKDGLWGL DEFESCYLSA 240 SSPLVYGEMM SVVEDMRCLD DEESLSYDFV KDFKSCAWDV EDFFGDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-19 | 116 | 171 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017217800.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A161X6W9 | 0.0 | A0A161X6W9_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-29 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025238 |