PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22315.2 Da PI: 9.3456 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 91 | 142 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+++AeIr p + k kr++lg++ t+e+Aa a+++a+ k++g DCAR_025068 91 SRYRGIRRRP-WGKFAAEIRSPAK--KGKRVWLGTYETPEDAALAYDRAAFKIHG 142 79********.**********944..34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-13 | 91 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 91 | 151 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 92 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 92 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-37 | 92 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.53E-26 | 100 | 152 | No hit | No description |
PRINTS | PR00367 | 4.0E-10 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNQDLFMGTD LSYLLQSIEH QLLDDSDLAN IYPSMNSSCW EPPEPILNNF FFVESDEPAL 60 SLEYTPRMEV EEKKQEDKAA QPVTRAPHGR SRYRGIRRRP WGKFAAEIRS PAKKGKRVWL 120 GTYETPEDAA LAYDRAAFKI HGSSAKLNFP HLIGKNIPEP VKVTPRQRSS TSSSCSSSSS 180 SSNSGCIKKS AKVATIYRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-28 | 93 | 150 | 6 | 63 | ATERF1 |
3gcc_A | 6e-28 | 93 | 150 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017216541.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A164TU83 | 1e-146 | A0A164TU83_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091474 | 2e-54 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-33 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025068 |