PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024960
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 645aa    MW: 71549.7 Da    PI: 6.5037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024960genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.2e-1096120126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  DCAR_024960  96 FKTKLCCKFRA-GTCPYVTNCNFAHS 120
                  69*********.*************8 PP
2zf-CCCH17.95.7e-06175195626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+ f+    C+yGd+C+F H+
  DCAR_024960 175 CKKFFTEEGCPYGDNCTFVHD 195
                  99999999************7 PP
3zf-CCCH42.97.8e-14238263126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ + +tG+C++G++C+FaHg
  DCAR_024960 238 WKTRICNKWEQTGYCPFGNKCHFAHG 263
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.07E-793126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-1493128IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13195122IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-796120IPR000571Zinc finger, CCCH-type
SMARTSM003560.4169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61169197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-8170197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-17233267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-10234268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826237265IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-11238263IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.28E-20453524No hitNo description
Gene3DG3DSA:3.30.40.105.0E-18473520IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136393.2E-13474517IPR001841Zinc finger, RING-type
CDDcd001622.75E-11474520No hitNo description
SMARTSM001841.1E-4475516IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.283475517IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MDYGRESGNV VHIIPTNQVI DVEKWGSGSA DQAIWATEED YGAWNREASV DVNSNYDGKQ  60
SQSRSGSEPP NKKLRNAQSV DLQSNNRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS  120
IEELRRPPPN WQEIVAAHEE EQGISSEPRE EFQIPSLDSN VFPPEMQRSS KGRHCKKFFT  180
EEGCPYGDNC TFVHDEQSRA RESVAISLGP GSGGGYSGGT VNTAGNVLSP STLKPSNWKT  240
RICNKWEQTG YCPFGNKCHF AHGAEELHRY GGGLMDSEGK DFSSPLDAKL GMAASKSPAD  300
NLAASVNHSD NYHVGGQSQR LANIPYGYDN LSSLSKEFEN LSSVTLAPSQ LDCQSLAGRL  360
ATALSAHRKM PPSNVDANAP EQGHYYTSPP LTIIITIIIL VFLLVGFFTL YFCKCFFQNF  420
LESRVGQRTS SNRTAADNPN AAAFTGLDPA IVNTFPTFTY SSVKEYRRAK YSLECAICLL  480
EFEDDHIIRL VKICSHAFHQ DCIDLWLEMH KTCPVCRRNL DSILEGTPSC TPSHDEEDSM  540
KDSVAITIRD DHEGTNHGEK KRGTNDFIGR SNTTGHSIFT SREEEDRFTL RLPDHVTQEL  600
IQANRWPKNL HTSREPKRNV YIVGEGSDGN IKNVKVPPIF LDNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215698.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ32e-99C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A161Y6B10.0A0A161Y6B1_DAUCS; Uncharacterized protein
STRINGMigut.N01445.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-101C3H family protein