PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024199
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 277aa    MW: 30092.1 Da    PI: 5.3432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024199genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.1e-10126170554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P++      K +Ka++L +  +Y+k L
  DCAR_024199 126 HSIAERLRRERIAERMRALQELVPSC-----NKSDKAAMLDEILDYVKFL 170
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-15119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.87E-11119175No hitNo description
PROSITE profilePS5088816.266121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7126170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MANNPPDGYS DDFLEQILAI PSYNGLSNPD GTSSEAASHL PGGAQQPFFP LGLSLDNGQR  60
ERGAMNMGNL FPVFEHLQPH SVRHAVPQMH QGFQGPPTTS TAVTVPHPPN MRPRVRARRG  120
QATDPHSIAE RLRRERIAER MRALQELVPS CNKSDKAAML DEILDYVKFL RLQVKVLSMS  180
RLGGAGAVAQ LVSDGPLQSV EGGMIENGGD RPVWENWSND DTEQEVAKLM EEDVGAAMQF  240
LQSKALCIMP ISLAALIYPS NQSDISIVKP EPPPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219755.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227682e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A164T5110.0A0A164T511_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000348401e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]