PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024004
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 535aa    MW: 60870.3 Da    PI: 4.1851
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024004genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.86e-501715334373
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lL +  ea+++g+ +la+al+ar+++ +sp g++++R+a+ + +  +++              ++++   s++   a+k+f+e++P+ +fsh++aN+a
  DCAR_024004 171 LLQAYGEAMDDGQIQLADALVARINQKVSPVGKTLERVAFNLFQSTENQGCY----------IKQEA---SKNLEEAFKAFYEIFPYGRFSHFAANSA 255
                  566677999*******************************988776665443..........45555...4455567889****************** PP

         GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  Ilea+  + e++Hi+Df+++ G+QWp+L++++ s      +lR+T v+++++     s  + e+t+++L+++A++ ++++ ++ +   +ledl ++ +
  DCAR_024004 256 ILEAMPDDaETIHIVDFEMGSGIQWPSLIESIGST---DKTLRLTSVKAEDNYasesSIWKFEKTKWQLHEYARSYNIKLIIEEM---TLEDL-MKYI 346
                  *****88879***********************95...557********8887877777789*********************97...55555.4444 PP

         GRAS 195 rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqe...adhnsesFlerflealeyysalfdsleaklpres 279
                  ++++    +E la n++++l +l   s  +++ + ++L++ + +  +      ++++ + e   +  n+++F   f++ l++y al++s+e ++p + 
  DCAR_024004 347 EISKsenkREWLAFNCMVNLPHLG--SRRSRNDIMKFLWVAQAVLVNfttyrgILTFGHGEegeMMKNTSTFSSFFSDRLRHYHALYESMECNFPDNF 442
                  444444679**************8..33333346888888888765522233367776443333777****************************998 PP

         GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                   e+r  +E  +lg+ +++   c     ++r e++++     +  G++ +++s++   +ak ++++ +   y v    +++++l+l W + pL+ vS W
  DCAR_024004 443 aEARLAMESLFLGPYVSSPS-C-----FKRWEEMKSGPVSASVIGLQGLKVSQESLLEAKDMINEGD-TLYAVRnegQNENELILEWGGSPLFRVSTW 533
                  899***********998653.3.....33457788899999***********************999.669999445559****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.895142512IPR005202Transcription factor GRAS
PfamPF035142.1E-47171533IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MEHQLSLPSW ELHNIVSSFF DQPMQISSYD PQLSPAITTS ENSHTNSSDS YVPYFLSDEF  60
IDQTLLDDKM PDILPMESLE VISSHEFGKV CGWLDASEGE DYNLPQLSME EKDLWSPDLL  120
TESSVEEKDL WSPDLLLESY NETECLQPGN ESLILPTDDM EVDIQSSLCP LLQAYGEAMD  180
DGQIQLADAL VARINQKVSP VGKTLERVAF NLFQSTENQG CYIKQEASKN LEEAFKAFYE  240
IFPYGRFSHF AANSAILEAM PDDAETIHIV DFEMGSGIQW PSLIESIGST DKTLRLTSVK  300
AEDNYASESS IWKFEKTKWQ LHEYARSYNI KLIIEEMTLE DLMKYIEISK SENKREWLAF  360
NCMVNLPHLG SRRSRNDIMK FLWVAQAVLV NFTTYRGILT FGHGEEGEMM KNTSTFSSFF  420
SDRLRHYHAL YESMECNFPD NFAEARLAME SLFLGPYVSS PSCFKRWEEM KSGPVSASVI  480
GLQGLKVSQE SLLEAKDMIN EGDTLYAVRN EGQNENELIL EWGGSPLFRV STWM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-121694552289GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217018.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A161ZLB20.0A0A161ZLB2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-20RGA-like 2