PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023754
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 330aa    MW: 37053.8 Da    PI: 9.0277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023754genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.29.8e-21139231183
                  EEEE-..-HHHHTT-EE--HHH.HTT...........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+kvltpsdv+k+ r+v+pk +a+ +           +   e    + ++ ++d+s   W+++++y+k s++yv+++GW +Fv+an+L+++D v+F 
  DCAR_023754 139 FEKVLTPSDVGKLYRIVIPKMYAN-CfssisdgnkssS---EvlpFNDEIAFYDRSMTLWKFRYCYWKASKSYVFSSGWINFVRANKLNSKDKVIFF 231
                  99********************94.4599996554442...14556669*******************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-64094IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.108.1E-24134233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-22136238IPR015300DNA-binding pseudobarrel domain
CDDcd100176.25E-20138230No hitNo description
PfamPF023625.3E-18139234IPR003340B3 DNA binding domain
PROSITE profilePS5086310.743139247IPR003340B3 DNA binding domain
SMARTSM010192.7E-12139247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKNLLNVTAH MLGQASGSDD MRHNLSCTKR ARQDRNIFSS GPKGVVALLS GNWAAHVYLN  60
HNWICIGIFK TENEAVRAYE SSTAKILVDC LNINLQKRSN TAQELNILKQ ARIDGTGSCR  120
SVNTSQVHGT QKFTRTQLFE KVLTPSDVGK LYRIVIPKMY ANCFSSISDG NKSSSEVLPF  180
NDEIAFYDRS MTLWKFRYCY WKASKSYVFS SGWINFVRAN KLNSKDKVIF FKCEHVETAV  240
VHTYFAIDVE YYADRGGVEE ASSNSGKYVT NGEQFHLKEG VQNINDEQND CGTACTRHKR  300
NIEVDNDLER TGSGKAPQTS FKLFGVKIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-19135233496B3 domain-containing transcription factor NGA1
5os9_B2e-19135233496B3 domain-containing transcription factor NGA1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217523.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017217524.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017217525.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017217526.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017217527.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017217528.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A161ZKS40.0A0A161ZKS4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-40RAV family protein