PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023593
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WOX
Protein Properties Length: 274aa    MW: 31806.8 Da    PI: 9.6652
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023593genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.58.7e-2262121357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   R+t+t+eql +Lee ++  +r+psa++++++A++l    +++ ++V++WFqN++a+e++
  DCAR_023593  62 ARWTPTPEQLYALEEIYQTgTRTPSATQIQQIAARLrrfgKIEGKNVFYWFQNHKARERQ 121
                  6*****************99**************************************97 PP
2Wus_type_Homeobox1116.5e-3662123465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +RWtPtpeQ+  Lee+y++G+rtP++ +iq+i+a+L+++Gkie+kNVfyWFQN+kaRerqk+
        DCAR_023593  62 ARWTPTPEQLYALEEIYQTGTRTPSATQIQQIAARLRRFGKIEGKNVFYWFQNHKARERQKR 123
                        7***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.5E-659126IPR001356Homeobox domain
SuperFamilySSF466892.52E-1362127IPR009057Homeodomain-like
PfamPF000461.9E-1962121IPR001356Homeobox domain
CDDcd000864.22E-663117No hitNo description
Gene3DG3DSA:1.10.10.601.0E-963121IPR009057Homeodomain-like
PROSITE profilePS5007111.41863122IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSKKPSNLNT MFPSPVPATA YCGYLLKHDH NFCVANHHPS SGNERNKRGV MINTEEVMMG  60
AARWTPTPEQ LYALEEIYQT GTRTPSATQI QQIAARLRRF GKIEGKNVFY WFQNHKARER  120
QKRRRQQLRN DPFLNQPHFH GNVPSLGLRR TGLEVGQAKN WESVVSLATA EVAKGETDER  180
IEFEDTRLRL TMSTNEARNH NKLLVPYKEM TNNSKDERKY PTLELFPDWI CDRNDRYRIN  240
NAPETDDHRE TGTTNISTKF DPPHFFEFLP MKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217983.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A161Y2U00.0A0A161Y2U0_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-27WUSCHEL related homeobox 1