PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023349
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 559aa    MW: 62999.3 Da    PI: 4.675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023349genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.55.8e-801915562374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  v+ Ll+ Ae + ++++e+a++lL+  +  +s++g+p+qRl+ yf  AL++r+   ++  ++k+++++ ++ ++ s++  +   +++  P+ ++ ++ta
  DCAR_023349 191 VQHLLSSAEKLGEQQFECASELLSYCNGYSSNKGKPLQRLVYYFSAALRERIDLeMGLATSKTISSELEEAMRKSSS--INVSLHQRIPFCQIMQFTA 286
                  789*************************************************8857778888887777764444444..4446*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   qaI e v++++++H iD+di+ G+Q   L+q LasR      +l+iT+v     +s+    etg++L +fA++++++f+f+ +++ ++ dl+ + ++
  DCAR_023349 287 MQAIIENVAQAKKIHLIDLDIKFGTQCSILIQDLASRLtCRVEHLKITAVRT---KSNMIPAETGKQLMSFAKSINLSFSFHEVTVADMLDLTEDLFE 381
                  *************************************955677*********...46777799*********************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++p+Ea+aV + + l ++  ++  le     +++++++++P v++v+e+e++hns+ F++rf+eal ++ a fd++ + +++++ +r  vE  ll+  
  DCAR_023349 382 LDPDEATAVYSPFFLWTMIGQQDRLEC----LMRVIRNINPCVMIVIENEVNHNSPMFVNRFVEALFFFGAHFDCFGECIHPDDPNRFAVEF-LLSLG 474
                  *******************77777777....***********************************************************95.5**** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n+va+eg+er+ r+ + + W + ++++ + + +ls++   qa+l+ ++++ +   +++ + +sl++gWk+ +++s+SaW+
  DCAR_023349 475 IQNIVAAEGKERTVRQVKNNVWISFFTQFEMVQKELSTSSLYQARLVAKNFNcETSCSLDMDGKSLIIGWKGTSVYSLSAWE 556
                  ****************************************************9999*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.515164535IPR005202Transcription factor GRAS
PfamPF035142.0E-77191556IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEEMFQSIQP DISGSSDIRG SNFPEKNVDK QFQDSQNCAS HQEQQMSVFS GFEFGEQQMS  60
VFSGFERFAE LCFSSNPSPF QLSQEEHEKL RNIHSEVLEL VAPEEDESSP SSLSPFRILS  120
SSRSNFKGQN PVEVKVSGSD VSWPKVSSQS VNEIIRLAGE NIIQSRSVKV DDHVEPSQGP  180
SDEKSEDVVI VQHLLSSAEK LGEQQFECAS ELLSYCNGYS SNKGKPLQRL VYYFSAALRE  240
RIDLEMGLAT SKTISSELEE AMRKSSSINV SLHQRIPFCQ IMQFTAMQAI IENVAQAKKI  300
HLIDLDIKFG TQCSILIQDL ASRLTCRVEH LKITAVRTKS NMIPAETGKQ LMSFAKSINL  360
SFSFHEVTVA DMLDLTEDLF ELDPDEATAV YSPFFLWTMI GQQDRLECLM RVIRNINPCV  420
MIVIENEVNH NSPMFVNRFV EALFFFGAHF DCFGECIHPD DPNRFAVEFL LSLGIQNIVA  480
AEGKERTVRQ VKNNVWISFF TQFEMVQKEL STSSLYQARL VAKNFNCETS CSLDMDGKSL  540
IIGWKGTSVY SLSAWEFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-341905564375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216814.10.0PREDICTED: DELLA protein RGA-like
TrEMBLA0A164SJZ80.0A0A164SJZ8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-40RGA-like 1