PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023348
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 531aa    MW: 59648.5 Da    PI: 5.3935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023348genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.23.2e-831595282374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalkl.fsevsPilkfshl 96 
                  ++ Ll++Ae v+++++ +a  lL++  e a  +g+p+qRl+ yft+AL+ r+   ++  ++k + + +  + +++++++  ++l  +   P+ ++ hl
  DCAR_023348 159 IQHLLAAAEKVDEEQFDRAIVLLNQCDEYACAEGNPIQRLVYYFTKALRVRIGLkTGRLTSKDMeKLKWIDITKTIQSAIPTSLmVHRHVPFSQVVHL 256
                  689*************************************************8724444555553333333333333333333348999********* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  ta qaIleav++++r+Hi+D+di+ G+Q+ +L+q LasR+e p  +l+iT+vg    +sk e+e+ g  L+ fA +++++f+fn+++++++ dl+ + 
  DCAR_023348 257 TAAQAILEAVAEAKRIHIVDLDIGIGVQFSSLIQGLASRQECPVeHLKITAVGT---KSKSEIEKAGVWLEAFAVSMNLSFSFNIVMVSDMLDLDASL 351
                  ****************************************76655*********...68*************************************** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++++++E+laV +++ l ++  ++  le     ++k+++s++P v+ v+e+ea+ ns+ F+ rf+eal yy a fd+le+ l +++ +r+ +E +  g
  DCAR_023348 352 FKLNSNESLAVYSSFLLWTMICQQDRLE----CLMKVLRSINPCVIFVAENEANINSTVFVSRFTEALFYYGAHFDCLENCL-SDDPARNILESVNYG 444
                  ********************95555555....5**********************************************997.889************ PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +i+n+++ e+++r+ r  +++ W+  ++++ + +++ls++   qa+l+ ++++ +   ++  + +sl+ gWk+ pL+s+S+W+
  DCAR_023348 445 HAIENILMPEKEQRTTRYVKVNVWKTFFTRFNMVQIELSTYSLYQARLVAKNFGcGSSCSLAMDGKSLLVGWKGTPLISLSVWK 528
                  ******************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.929132507IPR005202Transcription factor GRAS
PfamPF035141.1E-80159528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTEMFPFRNL DFTRFPDESS SSKDFSKILQ PLSGFVGFND LSVRILSPFH LCQDECIKLT  60
NIQSEISNLL SAKQPVTSSF EISEDPRSKC SQRSSEKLDE TSRSEVSEQA LSTTEIIWLA  120
GEKFIQSSSV GVYDSLELDL SSSTFLLGPD KKERDVQVIQ HLLAAAEKVD EEQFDRAIVL  180
LNQCDEYACA EGNPIQRLVY YFTKALRVRI GLKTGRLTSK DMEKLKWIDI TKTIQSAIPT  240
SLMVHRHVPF SQVVHLTAAQ AILEAVAEAK RIHIVDLDIG IGVQFSSLIQ GLASRQECPV  300
EHLKITAVGT KSKSEIEKAG VWLEAFAVSM NLSFSFNIVM VSDMLDLDAS LFKLNSNESL  360
AVYSSFLLWT MICQQDRLEC LMKVLRSINP CVIFVAENEA NINSTVFVSR FTEALFYYGA  420
HFDCLENCLS DDPARNILES VNYGHAIENI LMPEKEQRTT RYVKVNVWKT FFTRFNMVQI  480
ELSTYSLYQA RLVAKNFGCG SSCSLAMDGK SLLVGWKGTP LISLSVWKFT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-4119252837375GRAS family transcription factor containing protein, expressed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216813.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A164SJY30.0A0A164SJY3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-46RGA-like 2