PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_023274
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WOX
Protein Properties Length: 370aa    MW: 42504.2 Da    PI: 6.5189
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_023274genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-2183142357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql+ Le+l+++ +r+ps+ee++e++++l    +++ ++V++WFqN++a+e++
  DCAR_023274  83 SRWNPTAEQLQMLEDLYRRgTRTPSTEEIQEITAQLrrygKIEGKNVFYWFQNHKARERQ 142
                  7*****************99**************************************97 PP
2Wus_type_Homeobox115.13.5e-3782144365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt+eQ+++Le+ly++G+rtP++eeiq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
        DCAR_023274  82 SSRWNPTAEQLQMLEDLYRRGTRTPSTEEIQEITAQLRRYGKIEGKNVFYWFQNHKARERQKR 144
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.1E-580147IPR001356Homeobox domain
PfamPF000462.4E-1983142IPR001356Homeobox domain
SuperFamilySSF466892.65E-1283147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-983142IPR009057Homeodomain-like
CDDcd000863.54E-684144No hitNo description
PROSITE profilePS5007111.49988143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MWMMGYNEAA DFNLQDSFNG RKLRPLIPRP NPTSTSSQIS RNAATGSSYL HRTHDLLAFN  60
HHMAAMSEQN KRDFNTQQVI VSSRWNPTAE QLQMLEDLYR RGTRTPSTEE IQEITAQLRR  120
YGKIEGKNVF YWFQNHKARE RQKRRRQLES SQPFEQISIM EEPEKKESGL NRTGFEAEQG  180
QTKNWPPPTN CSTLAEKTVS IERAAKTVTA SSEFRADHGW IHFEEGELHQ RRTLAERNAT  240
WQMMQLSCSS PINYTNSTIS PSTVRALDPK LIKSPHQDPV NFFQIPNMTT SDHIRLNYFF  300
GGADHDDRGD GKMAGYDDEK SHTLQLFPLR SEDMLSDENG DEDKDLETSI ASMTNSTPSQ  360
FFEFLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257067.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A161X9U00.0A0A161X9U0_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g02460.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46812342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-64WUSCHEL related homeobox 1