PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | SRS | ||||||||
Protein Properties | Length: 182aa MW: 20395 Da PI: 8.7347 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 168.6 | 3.3e-52 | 2 | 140 | 6 | 153 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkelet 102 ++CqdCGnqakk+C+++RCR CC++rgf+C+thvkstW+p++ rr q +++ ++++ a kr r++ ssa+++ DCAR_023034 2 MRCQDCGNQAKKECVYMRCRSCCRNRGFQCQTHVKSTWIPVSTRRPALPQPSSSPPPPTHHHhVYPAIKRYRDH----------HASSSAHHPLGYGR 89 68********************************************9888887776666655233444555543..........22234455677888 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+e +a rcvrvss d++ +e+aYqt+v+i Gh+fkGiLydqG+ DCAR_023034 90 GEFPAETTFPATLRCVRVSSDDNAVDEYAYQTSVNIEGHIFKGILYDQGPV 140 99***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.8E-51 | 2 | 139 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.5E-25 | 4 | 45 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 6.8E-21 | 92 | 139 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MMRCQDCGNQ AKKECVYMRC RSCCRNRGFQ CQTHVKSTWI PVSTRRPALP QPSSSPPPPT 60 HHHHVYPAIK RYRDHHASSS AHHPLGYGRG EFPAETTFPA TLRCVRVSSD DNAVDEYAYQ 120 TSVNIEGHIF KGILYDQGPV RQEASSSAAA IFQQPYLFTT ASTQPFELVN PSTQFLPYPK 180 P* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257371.1 | 1e-134 | PREDICTED: protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A161XAH1 | 1e-133 | A0A161XAH1_DAUCS; Uncharacterized protein | ||||
STRING | XP_009602229.1 | 5e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 1e-40 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023034 |