PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022745

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

GATA

Protein Properties

Length: 788aa MW: 89345.9 Da PI: 9.3948

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022745	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.3	2.1e-18	659	692	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++t+Tp+WR gp+g+ tLCnaCG++yr + DCAR_022745 659 CSHCQVTHTPQWRAGPEGPNTLCNACGVRYRAGR 692 *******************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.300	0.001	85	191	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	0.001	257	258	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	0.001	305	424	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50114	13.099	653	689	IPR000679	Zinc finger, GATA-type
SMART	SM00401	5.1E-19	653	703	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.47E-14	655	714	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.2E-14	656	690	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	9.11E-14	658	705	No hit	No description
Pfam	PF00320	3.9E-16	659	693	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	659	684	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0010082	Biological Process	regulation of root meristem growth
GO:0010366	Biological Process	negative regulation of ethylene biosynthetic process
GO:0019827	Biological Process	stem cell population maintenance
GO:0045087	Biological Process	innate immune response
GO:0055070	Biological Process	copper ion homeostasis
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0008476	Molecular Function	protein-tyrosine sulfotransferase activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MWGLRLTLVI SEVREDLSRR KARACRGLQP FGPSLVLRRL EKNDIGLVTR NDGTLGFFNA 60 CSINKACSTQ NDFEHCQTTV KQWAYTSRDL DVKQDKQMLR DLLFFLHIPR TGGRTYFQCF 120 LKKLYSSSLE CPRSYDKLRF NPRKADCKLL STHNDYSIMS KLPKDKTSAM TILRNPLDRI 180 FSTYEFSVEV AARFLVHPNL TSVTRMSSRI RAKKVGVSTL DIWPWKYLVP WMREDLFARR 240 EARKLKGSAY TLSNQSYDMK DVVMPLLEYI RNPVALDIIH NGATFQVAGL TNSSNLEGSH 300 KVRHCVVKYQ SLGEHVLEVA KKRLDNMLFV GLTEKHKESA TLFSHVVGAQ AVSQLMALNS 360 TAEQTTDSDS DSESDTSLHQ NSSSYQMVKQ ITPAKIVEAT KGNMTVENLM EAYETCVSSL 420 RKTQAQRRNM SLNRISPANF TKEERLHVPE LVLQEITSLN NLDVQLYKYA QDIFAKQHRH 480 MVLKLASSNC NCMMDGYFHN GVTDVDADFL NLLSDLPENF EQEEENSVGV EDWEALFQRL 540 GPIPLDVLQG TCQNDGNSHF KESSGFQAPS PTSVLDSRSS GSRVKSTSSS PELFIPVRTR 600 TKRPRHSTTC KWHLITLSTP DSAMNKKVKK KKRKRMKHTS DAIEEKGYCS NQTVSGRRCS 660 HCQVTHTPQW RAGPEGPNTL CNACGVRYRA GRLVPEYRPA ASPTFVPSVH SNFHRRIIQM 720 RNKSIQESSV PQMHPATYSS QAELFPLHVA QVDRNFVPEA LVPEQHPPAR SPPIEFVPMS 780 SYLFDCI*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MWGLRLTLVI SEVREDLSRR KARACRGLQP FGPSLVLRRL EKNDIGLVTR NDGTLGFFNA  60
CSINKACSTQ NDFEHCQTTV KQWAYTSRDL DVKQDKQMLR DLLFFLHIPR TGGRTYFQCF  120
LKKLYSSSLE CPRSYDKLRF NPRKADCKLL STHNDYSIMS KLPKDKTSAM TILRNPLDRI  180
FSTYEFSVEV AARFLVHPNL TSVTRMSSRI RAKKVGVSTL DIWPWKYLVP WMREDLFARR  240
EARKLKGSAY TLSNQSYDMK DVVMPLLEYI RNPVALDIIH NGATFQVAGL TNSSNLEGSH  300
KVRHCVVKYQ SLGEHVLEVA KKRLDNMLFV GLTEKHKESA TLFSHVVGAQ AVSQLMALNS  360
TAEQTTDSDS DSESDTSLHQ NSSSYQMVKQ ITPAKIVEAT KGNMTVENLM EAYETCVSSL  420
RKTQAQRRNM SLNRISPANF TKEERLHVPE LVLQEITSLN NLDVQLYKYA QDIFAKQHRH  480
MVLKLASSNC NCMMDGYFHN GVTDVDADFL NLLSDLPENF EQEEENSVGV EDWEALFQRL  540
GPIPLDVLQG TCQNDGNSHF KESSGFQAPS PTSVLDSRSS GSRVKSTSSS PELFIPVRTR  600
TKRPRHSTTC KWHLITLSTP DSAMNKKVKK KKRKRMKHTS DAIEEKGYCS NQTVSGRRCS  660
HCQVTHTPQW RAGPEGPNTL CNACGVRYRA GRLVPEYRPA ASPTFVPSVH SNFHRRIIQM  720
RNKSIQESSV PQMHPATYSS QAELFPLHVA QVDRNFVPEA LVPEQHPPAR SPPIEFVPMS  780
SYLFDCI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	597	602	RTRTKR
2	625	633	KKVKKKKRK
3	628	633	KKKKRK
4	628	634	KKKKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the O-sulfation of tyrosine residues within acidic motifs of polypeptides. {ECO:0000269\|PubMed:19666544}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254257.1	0.0	PREDICTED: protein-tyrosine sulfotransferase isoform X1
Swissprot	Q3EDG5	0.0	TPST_ARATH; Protein-tyrosine sulfotransferase
TrEMBL	A0A161ZQL1	0.0	A0A161ZQL1_DAUCS; Uncharacterized protein
STRING	XP_009795847.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	2e-33	GATA transcription factor 11

Link Out ? help Back to Top
Phytozome	DCAR_022745

Publications ? help Back to Top
Komori R,Amano Y,Ogawa-Ohnishi M,Matsubayashi Y Identification of tyrosylprotein sulfotransferase in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(35): p. 15067-72 [PMID:19666544] Moore KL Protein tyrosine sulfation: a critical posttranslation modification in plants and animals. Proc. Natl. Acad. Sci. U.S.A., 2009. 106(35): p. 14741-2 [PMID:19717448] Stührwohldt N,Dahlke RI,Steffens B,Johnson A,Sauter M Phytosulfokine-α controls hypocotyl length and cell expansion in Arabidopsis thaliana through phytosulfokine receptor 1. PLoS ONE, 2011. 6(6): p. e21054 [PMID:21698171] Igarashi D,Tsuda K,Katagiri F The peptide growth factor, phytosulfokine, attenuates pattern-triggered immunity. Plant J., 2012. 71(2): p. 194-204 [PMID:22353039] Mosher S, et al. The tyrosine-sulfated peptide receptors PSKR1 and PSY1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner. Plant J., 2013. 73(3): p. 469-82 [PMID:23062058] Kang J, et al. Suppression of Photosynthetic Gene Expression in Roots Is Required for Sustained Root Growth under Phosphate Deficiency. Plant Physiol., 2014. 165(3): p. 1156-1170 [PMID:24868033] Stührwohldt N, et al. Phytosulfokine peptide signaling controls pollen tube growth and funicular pollen tube guidance in Arabidopsis thaliana. Physiol Plant, 2015. 153(4): p. 643-53 [PMID:25174442] Wu T, et al. An Arabidopsis thaliana copper-sensitive mutant suggests a role of phytosulfokine in ethylene production. J. Exp. Bot., 2015. 66(13): p. 3657-67 [PMID:25908239] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831]