PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022457
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 163aa    MW: 18665.8 Da    PI: 5.7171
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022457genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11.1e-143088563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 ++ +r+q+NRe+ArrsR RK++ ++eL   v +L+ eN++   + +  ++++ +l+se+
  DCAR_022457 30 RKRKRMQSNRESARRSRMRKQQHLDELSGQVSQLTRENEEILTKTKITTQHYMNLESEN 88
                 7889************************************9999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-192690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-112773No hitNo description
PROSITE profilePS5021711.1622891IPR004827Basic-leucine zipper domain
PfamPF001706.6E-122988IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-123085No hitNo description
CDDcd147021.10E-173182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGSLSGNSSG STQIQNSGSE GDLQVLMEQR KRKRMQSNRE SARRSRMRKQ QHLDELSGQV  60
SQLTRENEEI LTKTKITTQH YMNLESENLV LRAQMDELSQ RLDSLNEILN YMNMRNVNNN  120
NHSVEMFESC DNVFGTGGSE SFMSPWYLNQ QPIMAAADMF QY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255333.11e-117PREDICTED: bZIP transcription factor 53-like
SwissprotC0Z2L52e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A164VDE51e-115A0A164VDE5_DAUCS; Uncharacterized protein
STRINGXP_008221357.17e-56(Prunus mume)
STRINGEMJ248007e-56(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-40basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]