PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022400
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 691aa    MW: 74886 Da    PI: 6.3047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022400genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-07306326526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  DCAR_022400 306 PCPDFRK-GACRRGDMCEYAHG 326
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.1E-1933162IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.8E-1834161IPR020683Ankyrin repeat-containing domain
CDDcd002044.55E-1634160No hitNo description
SMARTSM0024814003565IPR002110Ankyrin repeat
PfamPF127964.2E-1243151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001782112IPR002110Ankyrin repeat
PROSITE profilePS5029715.72482158IPR020683Ankyrin repeat-containing domain
SMARTSM002487.9E-4117149IPR002110Ankyrin repeat
PROSITE profilePS5008811.541117152IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035639336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MCAVLKSTST SSTQSAEESK SDKQNMGLLS VETEDNFSSL LEFAANNDCE AFKALLEENS  60
LAVDEVGLWY VRKKGSKHIV LEHRTPLMVA ATYGSLDVVK FIISQPSVDV NIACGLDKCT  120
ALHCAASGGA VNVVDIVKLL LAVGADPDIK DANGQRAVDV IVAPPKVLYV KASLEELLLS  180
NVLDGLMGDC KLQVSISSQS NSPSLSSSPD NGSPCSPSDI VTSPMPSKFT DVPGGAISEK  240
KEYPIDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCDR RVCFFAHTPD  360
ELRPLYVSTG SAVPSPRSSA SAASVMDMAV AMNLLPGSPS ASLMSPSGFN QPMSPSGNGA  420
HSSLAWPQPN VPTLHLPGSN IQSSRLRSSL SARDVPPEDL HLLEDMDAHQ LLLNDLACLS  480
QSRPSPVSLN RSGRPKTLTP SNLEELFSAE LASSPRYSDQ AASASGFSPS HRSAVFNQFQ  540
QQQNMLSPIN TNVFSPKSAD HPLLQASYGV SSPGRMSPRS VDPISPMGSR HTAFSQREFQ  600
QPQQMRSLSS RDLGSNNVSI VGSPVNSWSK WSSPSGKVDW SVNGDENSWL PRSSSNDLNN  660
NTEEPDISWI QSLVKESPPE MKDKTASFNC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017259127.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A164VEP30.0A0A164VEP3_DAUCS; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]