PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021905
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 332aa    MW: 35817.8 Da    PI: 6.2872
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021905genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.5e-16240275134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kg
  DCAR_021905 240 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKG 275
                  *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.4E-11102137IPR010399Tify domain
PROSITE profilePS5132014.162102137IPR010399Tify domain
PfamPF062006.4E-12108136IPR010399Tify domain
PfamPF062034.2E-16171213IPR010402CCT domain
PROSITE profilePS5101713.304171213IPR010402CCT domain
PROSITE profilePS501149.13234282IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-13234288IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-12235284No hitNo description
Gene3DG3DSA:3.30.50.103.5E-15238281IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-15239289No hitNo description
PROSITE patternPS003440240267IPR000679Zinc finger, GATA-type
PfamPF003202.3E-14240275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPHRNLRVSM FGNEAMNSSI QQHNPQIEDN EEEEDIPSGG ESIDNPHIRY EAASHALQNG  60
GVVGQPSNGM EPMNGNGLDS INVVPHQHQM YVPGSDVVPH TGGGGVDQLT LSFQGEVYVF  120
DAVSPEKVQA VLLLLGGYEV PTGIPTVGMP SQNQNQRGSS DLPGRASQPQ RAASLTRFRE  180
KRKDRCFDKK IRYEVRKEVA IRMQRKKGQF TSSKAISEDS GSASLEWNAG SGQEEQETSC  240
RHCGISSKST PMMRRGPDGP RTLCNACGLK WANKGILRDL SKVPTGGIHD PNVKPIDQID  300
GESHHSDVVP ALADVITSSN GDNSALTAEK C*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254280.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_017254281.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL76e-83GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A161ZV580.0A0A161ZV58_DAUCS; Uncharacterized protein
STRINGXP_009609389.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-85ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]