PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 22032.3 Da PI: 4.5511 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.8 | 1.8e-35 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF Ptdeel+v++L++k++ + + ++i+++d+y ++PwdL+ k+ +e ++wyf+s+r +nr+t++gyW+ g d++++s+ ++ DCAR_021838 8 LPPGFRFCPTDEELLVHFLQRKASLLPYHP-DIIPDLDLYPYDPWDLEGKALGEGSKWYFYSRRT--------QNRITSNGYWNPLGGDESIYSSsTS 96 79*************************998.89**************977778899******984........589*****************99788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk +fy g +++g+kt+W+m+ey+l DCAR_021838 97 KKVGTKKYYAFYIGASSEGVKTNWIMQEYKL 127 89***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-45 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.623 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-21 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGDNNVNLPP GFRFCPTDEE LLVHFLQRKA SLLPYHPDII PDLDLYPYDP WDLEGKALGE 60 GSKWYFYSRR TQNRITSNGY WNPLGGDESI YSSSTSKKVG TKKYYAFYIG ASSEGVKTNW 120 IMQEYKLSDA AASSSRSSSS KRKSSKTDHT KWVVCRVYEH DYDEDEDGGT ELSCLDEVFL 180 SLDDEFDEIS LPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-38 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-38 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-38 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-38 | 4 | 159 | 13 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-38 | 4 | 161 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-38 | 4 | 159 | 13 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-38 | 4 | 159 | 13 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256979.1 | 1e-142 | PREDICTED: NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 2e-83 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A164VSQ1 | 1e-141 | A0A164VSQ1_DAUCS; Uncharacterized protein | ||||
STRING | GLYMA08G08010.1 | 8e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-52 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021838 |
Publications ? help Back to Top | |||
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