PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021411
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 344aa    MW: 38133.6 Da    PI: 6.8718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021411genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09185232455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  DCAR_021411 185 SHSLAERVRREKISERMKMLQALVPGC----DKVTGKALMLDEIINYVQSLQ 232
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17179248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-11179236No hitNo description
Gene3DG3DSA:4.10.280.105.5E-17181247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAAFSYNNPA LVDSTSFLFP NTPLLLPSYD NNNNDNIINN NGRICGFLGD INNSFPCFSQ  60
PFYPAAQGPL QEVSSLNVSS TTKVSSLSNS SSMVTDQNQN NMIPDSSLEP HKKRKSSSKF  120
NSAQSKDTSE VIEKGKKQRR SRGGAEKKDE EINKNNNVEK GKEEKEGAPS GYIHVRARRG  180
QATDSHSLAE RVRREKISER MKMLQALVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM  240
KLASMNPMFY DFGSDMETIM IKPESVSFEA QQADCSPPQF TTNTFTPANN YPLLDSSGSL  300
LLQHGQMPEI PHQGNGQLSW DSNEHRQKIM SQSGFPNNLC SFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918263e-71FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255458.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A164W3580.0A0A164W358_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000511372e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-54bHLH family protein