PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_021257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22153.8 Da PI: 9.2953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3e-20 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+taeeAa+a++ a++ ++g+ DCAR_021257 22 HYRGVRKRP-WGRYAAEIRDPTK---KTRVWLGTFDTAEEAARAYDTAARDFRGH 72 6********.**********864...6***********************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.41E-32 | 22 | 81 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 22 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-23 | 22 | 80 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.118 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-33 | 22 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-12 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-12 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MAMKDKSKLA KRSAASDVKE VHYRGVRKRP WGRYAAEIRD PTKKTRVWLG TFDTAEEAAR 60 AYDTAARDFR GHKAKTNFPS SSAYVNTLHS PCNSSTGDML THAPLGLELT RHHYQPPVGY 120 HQASQVMMYD YEAFLRSGMA YPVRLSPVRI DGGSCSGSDS SSVVQGNDCT QNDATITSKQ 180 TVRKALNLDL NLAPPLEEDQ * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 19 | 79 | 2 | 63 | ATERF1 |
3gcc_A | 1e-21 | 19 | 79 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255520.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q40477 | 1e-44 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A164W7A3 | 1e-149 | A0A164W7A3_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068959 | 3e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-26 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_021257 |
Publications ? help Back to Top | |||
---|---|---|---|
|