PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | SBP | ||||||||
Protein Properties | Length: 181aa MW: 19863 Da PI: 9.8744 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 57 | 134 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl++ak+yh+rhkvCe h+ka+vv+v+g+ qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++ DCAR_021254 57 CCQAERCSADLNDAKQYHKRHKVCEYHAKAQVVVVAGVGQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKSSS 134 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.4E-33 | 51 | 119 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 55 | 132 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-38 | 56 | 135 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-31 | 58 | 131 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MENHQRIIKQ EEDMEEGHEF SGNDKKKIRS GNNGARKIGN TGSNVSGGGS GSPPMRCCQA 60 ERCSADLNDA KQYHKRHKVC EYHAKAQVVV VAGVGQRFCQ QCSRFHELSE FDETKRSCRR 120 RLAGHNERRR KSSSDSQGEG GGSSSRKGST AAGGSKDLCG KVQISSMQEN ATTFKHFQIR 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-39 | 48 | 131 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156. {ECO:0000269|PubMed:16914499}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254243.1 | 1e-130 | PREDICTED: squamosa promoter-binding protein 1-like | ||||
Swissprot | Q9S758 | 4e-43 | SPL5_ARATH; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | A0A164W7B6 | 1e-128 | A0A164W7B6_DAUCS; Uncharacterized protein | ||||
STRING | XP_002517882.1 | 2e-55 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 1e-33 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021254 |
Publications ? help Back to Top | |||
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