PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020496
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 245aa    MW: 28140.7 Da    PI: 8.2934
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020496genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.62e-33231142102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y ++ed++++ ++sw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F kgkk+ll ki+
   DCAR_020496  23 FLMKTYMLVEDPATDAVVSWNSEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATTR---------WEFCNDMFCKGKKDLLFKIR 110
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
   DCAR_020496 111 RRKS 114
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3218112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5019112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGESEKELV EEYMARKSSP PPFLMKTYML VEDPATDAVV SWNSEGTGFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKVATTR WEFCNDMFCK GKKDLLFKIR RRKSWTNKPH  120
PVAQTLKEQS ADHDQDDANQ RSKSTSSTSS SSGYTSLVDE NKRLKQQNWV LNSELSSLKN  180
KCNELLDMVA IYTKKENIYD DDEKDEGPKL FGVKLQGEMR KRKREESNIG DANAPTYFVS  240
QLCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-221411211120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255465.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222306e-69HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A161YGF90.0A0A161YGF9_DAUCS; Uncharacterized protein
STRINGPOPTR_0016s05680.19e-92(Populus trichocarpa)
STRINGXP_009617028.12e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-65heat shock transcription factor B3