PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020476
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 733aa    MW: 80257.3 Da    PI: 5.4968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020476genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07311331526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  DCAR_020476 311 PCPDFRK-GACRRGDMCEYAHG 331
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.32E-1445166No hitNo description
SuperFamilySSF484031.71E-1746168IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-1771168IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-1084156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03888118IPR002110Ankyrin repeat
PROSITE profilePS5029718.66988190IPR020683Ankyrin repeat-containing domain
PRINTSPR014152.1E-589104IPR002110Ankyrin repeat
PROSITE profilePS5008812.823123158IPR002110Ankyrin repeat
SMARTSM002485.4E-5123155IPR002110Ankyrin repeat
PRINTSPR014152.1E-5142156IPR002110Ankyrin repeat
SMARTSM003564.0E-6306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4310333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582311333IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5311331IPR000571Zinc finger, CCCH-type
SMARTSM0035640341364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MGCASERVKE ILPPISLSPS QTDSTQLPDI DMNGLNVETE DTFVTLLEMA ANNDVEGFKR  60
WIQRDPSAID EVGLWYGRQK GSKQMVLEDR TPLMVAATYG SVDVLSLILS LSEADVNQSC  120
GLDKTTALHC AASSGSLKSI DVVKLLLSAG ADPNLIDANG YRPADVILVS PKFQDMKLVL  180
GELLVNNGPD GINDLRVSCA TSNSNPSLLS PSSPENRSPS SASNSTSSPK ITNFDDLNST  240
FAAEKKEYPV DPSLPDIKNG IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR  300
DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG ISCNRRVCFF  360
AHKHEELRPL YVSTGSAVPS PHSNTTAASG MDFAAAMSLL PSSPSSVCAM SSSPFTPPMS  420
PSANGLQNLG WHQANVPTLQ LPGSNLQSSR LRSSLNARDI HAEDMNLLQD FDMQQQQLLH  480
EFSRLSQPNV SANSLNRSVR SRNLTPSNLD DIFSSESLSP RYSDPPLASS VFSPRQNSSI  540
LNQFHQQQSM LSPINTNFSP NKVDNPLQNS YATPLGRMSP RNMEPISPLS SRVSTFAQRE  600
QQQFRSLSSR ELGSSSSFSV GSPGDSWPKW GSSNGNAEWN VNNKDFGQLK RSATLEANTN  660
EEEPDLSWVQ SLVKESHHEA NQDSVSHVPG AAGIADASFS NSSNLNSGIE PTEQSVLGAW  720
IEQMQLDQML AQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258760.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A161YGH20.0A0A161YGH2_DAUCS; Uncharacterized protein
STRINGXP_002526718.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]