PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020474
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 922aa    MW: 102805 Da    PI: 6.6694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020474genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-08863913446
                      S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg.....tWktIartmg...kgRtlkqcksrwqk 46 
                      W+  E+e l+++vk++ ++      WktI +  g   k+Rt+ ++k++w++
      DCAR_020474 863 WSNAEEEALKEGVKRFASHhdglmPWKTILEFGGdvfKNRTAIDLKDKWRN 913
                      *************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-9545597IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.582547596IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.103.5E-9548597IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.9E-8549594IPR001965Zinc finger, PHD-type
PROSITE patternPS013590550593IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500906.655855915IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-8856917IPR009057Homeodomain-like
SuperFamilySSF466891.22E-9857915IPR009057Homeodomain-like
CDDcd116603.95E-12863916No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MESKRRRSDA LLPWFLAIEA LASYQTDPSF LFDLVKKIPG DCSENDGKNA RELVCLRVLE  60
SLSVLENGKM KADSGARISP SDCCEDVLIQ VLLKISSREN QELSKSGMLK GDIEQYVKRK  120
ISCLPKCGLE RDVLLKDSDV IPLSVKEKSG LLKKYHSDGN ATRDERSDRD ALFPWFLAIE  180
ALTSDQTDPS FLFDLVKKIP RDCSENDGKN ARELVCLRVL ESLSVLENGK IKADSSARIS  240
PSDCGEDVLI QSSRENQELS KSEMLKGDIE QYVKRKISCL PKCGLEQLKD VILKDSDVIP  300
LSVKEKSGLS KKYHSDGNST RDERSDCDAL DDPPVRDLPS GKTDVKDSGY ANQEGSTSLN  360
EKFHVDSVPV EIVQHSGEEE SNLLRELGVE NLRETVTSEN VDSDRVASKK LRMSFTVGDA  420
QLLHNQLQGT CNVEKLTQGT SGEEHDLNII AGEAKNDAEG YVESKTVVSS PRFVDQGTNS  480
VHEAKDNCDH SLSLTPNSLR CGEIRATVES EHQSETLSDD EILIRNTTFL NSQCSHSQDS  540
LATLNGMKLC MICKIGGQLL VCSSGSCQRV VHERCMGVAP TFDVTRRFYC PFCAYSRAIS  600
EYSESKKKYS LARKTLVAFI NRDEYRLRNS SSVLHREDQN HSRESEISNK SIEENRLENV  660
VSREIKNSSR KNTGDKPSIS CDSSSRKRAR AVTSGENEVA LEVKSNAEGC QSLSEQEKQV  720
PVLGVQNREP ESSLPGVSEQ LGTVEKLQEF SHQPKGVPQV ENKEDLYLAS QAIKDSEAYS  780
SKSKYSEIAY RRKRHSGTPK EQDVSNQPTV SPCEPAKPKH SAEGKSSGER SESTTQHSLR  840
IRKRKQQYSY PSMPHLRRKK ILWSNAEEEA LKEGVKRFAS HHDGLMPWKT ILEFGGDVFK  900
NRTAIDLKDK WRNISKASAK V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1841859RKRKQQYSYPSMPHLRRKK
2842859KRKQQYSYPSMPHLRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258804.10.0PREDICTED: uncharacterized protein LOC108227921 isoform X2
TrEMBLA0A164WRU40.0A0A164WRU4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-10MYB_related family protein