PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020464
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 1091aa    MW: 121011 Da    PI: 6.963
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020464genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22132233199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  DCAR_020464 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQ 225
                  99*****************************96555444..8************************************************..568888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  DCAR_020464 226 LLLGIRRA 233
                  9****997 PP
2Auxin_resp116.81.9e-38258341183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  DCAR_020464 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsSQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 341
                  79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-43122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-41123247IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-19131223No hitNo description
PfamPF023621.9E-20132233IPR003340B3 DNA binding domain
SMARTSM010197.2E-23132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942132234IPR003340B3 DNA binding domain
PfamPF065073.7E-34258341IPR010525Auxin response factor
PROSITE profilePS5174518.50710031090IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1091 aa     Download sequence    Send to blast
MKTPANAAGA SMANPSEGAE KKSIINQELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDVDAQI PNYPNLPSKL LCLLHNVTLH ADPETDEVYA QMTLQPVPSF DKDSLLRSDL  120
SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPPNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSSQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDSV RWKNSQWRNL QVGWDESTAG ERRNRVSVWD  360
IEPVTAPFFI CPSPPFFRSK RPRQPGMPDD ETSDLDNIFR RTMPWLGDDF GMKDPQALPG  420
LSLVQWMNMQ QNSSQGNSMQ PNYMNSLPGS VLQNFTGTDL SRQLGFQTPQ IPLQNNIQFN  480
AQRTAQQTQQ LDQLQKLAPS SLNSLNSIMQ SQQQQQQQQM TDITQQQRQN CSNQMLPATQ  540
VQAQTMQSQS LAQNQMLQQQ PSIQNHQQHR SVSQSLQQQP QHQQQVATQT QQQNMVSSQQ  600
PDQVNQQLHM SENQIQMQLL QKLHQQQQSL LAQHSGLQHP SQLSQLQDQQ RQMLDSSQSY  660
SRSTSTSQMQ EMPQMVTSSL PQAHVIPQEM PRNNSQTNFG FTHPSQQSKL QQQSGLLPEF  720
SGQLGHNQPP IVNQLSTGGS SLLTGAAVGG QSGITDDVPS CSTSPSTNNS PNLITSTLNN  780
RARGSTVGDE LVQSSAMLLN YGGLETFSAH ANLAKDLHQK PDIKASLNMS KSPSQGFLAP  840
QTFLNAAGTQ MDYLDSSSSA TSGRISQNDA HLQNSNTLCF NSQTMPFRDS SHDGEVHVDP  900
RNNIPYEANI ASHLNMSMIS DTMIGKELTA SGKDFSNNLS SDGGMLSNYE NPKEAQPELS  960
TSIVSQSFGV PDMAFNSIDS TINDSSFLNS GAWAPAPQFQ RMRTYTKVYK RGAVGRSIDI  1020
ARYSGYEELK RDLARRFGIE GQLEDRHRIG WKLVYVDLEN DVLLVGDDPW ETGYILLSHP  1080
GLSLKFGSKT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1732136247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257944.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A164WS300.0A0A164WS30_DAUCS; Auxin response factor
STRINGEOY321500.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19