PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020327

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 384aa MW: 43514.9 Da PI: 6.2753

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020327	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82	6.1e-26	267	317	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ ++l++++k+F+lp+++AAk+L+v++TvLK++CR+++IkRWPhRkiksl DCAR_020327 267 TSALELDEIRKHFNLPLTEAAKKLNVGPTVLKKRCRELNIKRWPHRKIKSL 317 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.336	253	337	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-23	270	317	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MNSIVKVEFD NHDDQETTGG FIDNYSIYNG GSRIEEFDPM CEPWPLSGQH DDIPELSMKD 60 IEEITRSLDA DCSCLFHQPG NSTLVGATQP TVMASQPQIY NEPSPLVDAN TKIETTQSHQ 120 YFHAQNMFVD AVSVYATITH HEAQDFPTHY RRADYETTNQ PQYSNNYNVG NLGSSENVVY 180 NSMHLKDDYC DIFPLQIDEN VIVDAEPICM IPASANHVPQ CHNVSAAHDS GNVKSAINLK 240 SEQSSNVTAM VKYEEGVSLR QNARCKTSAL ELDEIRKHFN LPLTEAAKKL NVGPTVLKKR 300 CRELNIKRWP HRKIKSLQCL INNIKEMGMT NKKEIEMLEE SQRMLERVPE LELSESAKRL 360 RQSCFKANYK KRRLSRSSAA ARR*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MNSIVKVEFD NHDDQETTGG FIDNYSIYNG GSRIEEFDPM CEPWPLSGQH DDIPELSMKD  60
IEEITRSLDA DCSCLFHQPG NSTLVGATQP TVMASQPQIY NEPSPLVDAN TKIETTQSHQ  120
YFHAQNMFVD AVSVYATITH HEAQDFPTHY RRADYETTNQ PQYSNNYNVG NLGSSENVVY  180
NSMHLKDDYC DIFPLQIDEN VIVDAEPICM IPASANHVPQ CHNVSAAHDS GNVKSAINLK  240
SEQSSNVTAM VKYEEGVSLR QNARCKTSAL ELDEIRKHFN LPLTEAAKKL NVGPTVLKKR  300
CRELNIKRWP HRKIKSLQCL INNIKEMGMT NKKEIEMLEE SQRMLERVPE LELSESAKRL  360
RQSCFKANYK KRRLSRSSAA ARR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A164WVD2	0.0	A0A164WVD2_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	7e-35	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	DCAR_020327