PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25327.9 Da PI: 9.3049 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.9 | 6.1e-17 | 104 | 158 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++ + q ++Le+ F+ + +++ ++++ LA++l+L+ rqV vW+qNrRa+ k DCAR_020042 104 RKKLKLDRFQSRILEDSFKDHTTLNLKQKQALARRLNLKPRQVEVWYQNRRARNK 158 566778889********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 109.3 | 2.8e-35 | 104 | 191 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk++l + q+++LE+sF+ +++L+ ++K++lar+L+l+prqv+vW+qnrRAR k+kq+E+++e+Lk++y++lk+en+rLekev++L+ DCAR_020042 104 RKKLKLDRFQSRILEDSFKDHTTLNLKQKQALARRLNLKPRQVEVWYQNRRARNKLKQTEMECEMLKKCYETLKDENRRLEKEVQHLT 191 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-15 | 93 | 158 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.43E-16 | 95 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.175 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-12 | 102 | 164 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.77E-13 | 104 | 161 | No hit | No description |
Pfam | PF00046 | 3.0E-14 | 104 | 158 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.1E-10 | 160 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.6E-13 | 160 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNFEDLCSSG LSLGLASSER PKDRKISRGS SLNLALSLEL SSEGDVVARS GVLERQVSSI 60 SAVSSLSDSD FMKSKGGVGS IRELGGGREV FDDHDQDEDG MGGRKKLKLD RFQSRILEDS 120 FKDHTTLNLK QKQALARRLN LKPRQVEVWY QNRRARNKLK QTEMECEMLK KCYETLKDEN 180 RRLEKEVQHL TAIQGKGMMQ VPPANLTICP FCERITGSVS RFMTP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 160 | RRARNKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254986.1 | 1e-113 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46603 | 2e-57 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A164X214 | 1e-164 | A0A164X214_DAUCS; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__202__AT2G22800.1 | 2e-57 | (Arabidopsis lyrata) | ||||
STRING | Bostr.19427s0048.1.p | 2e-57 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-52 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020042 |
Publications ? help Back to Top | |||
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