PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019883
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 177aa    MW: 20219.7 Da    PI: 10.4589
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019883genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.6e-17102136135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C +  Tp+WR gp g+ktLCnaCG+++++ +l
  DCAR_019883 102 CTHCLSQRTPQWRTGPLGPKTLCNACGVRFKSGRL 136
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.4E-1495133IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.54396132IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-1496150IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-1597159No hitNo description
CDDcd002022.88E-11101148No hitNo description
PROSITE patternPS003440102127IPR000679Zinc finger, GATA-type
PfamPF003201.0E-14102136IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLHRFVIPGK ARSKRSRGPM GNKSRRITSQ FTSWSHHPYM TSSDPPLLQQ AYWLADSELI  60
LPKKEEHNVE TNPNKDYEHD DISGSLEGNN QNQNQQQQPR RCTHCLSQRT PQWRTGPLGP  120
KTLCNACGVR FKSGRLLPEY RPAKSPTFVS YKHSNSHKKV LEMRTMSHLS SNSSSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258694.11e-130PREDICTED: GATA transcription factor 2-like
TrEMBLA0A161ZX391e-129A0A161ZX39_DAUCS; Uncharacterized protein
STRINGEOY112039e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-39GATA transcription factor 9