PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019686
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SAP
Protein Properties Length: 709aa    MW: 77720.2 Da    PI: 5.7712
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019686genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP580.16.4e-1773441269452
          SAP  69 aasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaG 166
                  aa a  +++ vcstwravs sdllwq+ltrriW+ ++l ++tW eey+++hr arnfr +ry y  l+++pa  de+n++++l+Cr+l++sd ylaaG
  DCAR_019686  34 AALAYYQLY-VCSTWRAVSNSDLLWQNLTRRIWHCNNLRHNTWYEEYVHHHRLARNFRVGRYLYNPLHLSPA--DENNNNENLVCRRLTISDYYLAAG 128
                  666777777.*************************************************************9..5556778***************** PP

          SAP 167 fadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGv 264
                  f+dG+vrlf+l + l++stf+pq+r+rlG+fs avsGi++s+srlvfa+ldGdihva+ d   a+++rra+lGdvvndGalvdf G+++WwvGlyaGv
  DCAR_019686 129 FSDGTVRLFHLPNMLYLSTFRPQNRNRLGHFSPAVSGIILSESRLVFASLDGDIHVAMTDN--AIPPRRAHLGDVVNDGALVDFNGCSQWWVGLYAGV 224
                  ***********************************************************99..89********************************* PP

          SAP 265 pGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvds 362
                  pGrafh+W++ teelvf+GG+ltd eav+GWh+lteltel+Grvr+t+re avaCtslr +vfdlr+q +vl+eee+ r l+v+++da +e +v+vd+
  DCAR_019686 225 PGRAFHVWNGVTEELVFIGGTLTDHEAVRGWHLLTELTELIGRVRLTSRELAVACTSLRFIVFDLRDQVIVLGEEEFPRRLMVGAFDARHEEFVIVDR 322
                  ************************************************************************************************** PP

          SAP 363 rGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldf 452
                  rG a+vrrv +leevcrf vrg +qrgvlgC nggyal++ gg++r+Weie+ e  lysl er+ge+ alvad+r++ ++ssd+tihl  +
  DCAR_019686 323 RGSASVRRVGTLEEVCRFDVRGaSQRGVLGCTNGGYALMCVGGLIRAWEIEHGE-HLYSLVERIGEATALVADERYLVACSSDNTIHLHTY 412
                  **********************9*****************************77.9*******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.5E-643109No hitNo description
SuperFamilySSF813831.7E-543119IPR001810F-box domain
Gene3DG3DSA:2.130.10.105.9E-11116193IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.4E-14117187IPR017986WD40-repeat-containing domain
SuperFamilySSF509783.4E-14253412IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.9E-11334410IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF542111.47E-42426596IPR020568Ribosomal protein S5 domain 2-type fold
CDDcd113675.76E-122426697No hitNo description
Gene3DG3DSA:3.30.230.702.0E-7438600IPR027408PNPase/RNase PH domain
PfamPF011383.8E-24452591IPR001247Exoribonuclease, phosphorolytic domain 1
SuperFamilySSF556661.02E-19618703IPR015847Exoribonuclease, phosphorolytic domain 2
PfamPF037252.2E-7622684IPR015847Exoribonuclease, phosphorolytic domain 2
SuperFamilySSF542111.47E-42631645IPR020568Ribosomal protein S5 domain 2-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MLSSSDNSSI YGIKKSCAIA RLTKFWIADE MSVAALAYYQ LYVCSTWRAV SNSDLLWQNL  60
TRRIWHCNNL RHNTWYEEYV HHHRLARNFR VGRYLYNPLH LSPADENNNN ENLVCRRLTI  120
SDYYLAAGFS DGTVRLFHLP NMLYLSTFRP QNRNRLGHFS PAVSGIILSE SRLVFASLDG  180
DIHVAMTDNA IPPRRAHLGD VVNDGALVDF NGCSQWWVGL YAGVPGRAFH VWNGVTEELV  240
FIGGTLTDHE AVRGWHLLTE LTELIGRVRL TSRELAVACT SLRFIVFDLR DQVIVLGEEE  300
FPRRLMVGAF DARHEEFVIV DRRGSASVRR VGTLEEVCRF DVRGASQRGV LGCTNGGYAL  360
MCVGGLIRAW EIEHGEHLYS LVERIGEATA LVADERYLVA CSSDNTIHLH TYTYTYTYKL  420
GVMVGLSIGE KHFIEGGVAQ DIRTDGRRRL VYRPIQLQTG VIPQANGSAR VRMGGTEVIA  480
SVKAELGRPS SLQPDKGKVF INVDCSPTAD PIFEGRGGEE LSTELSGALQ ICLLGGKSGA  540
GAAIDLSSLS IVGGKICWDL YIDGLVVSAD GNLLDALGAA IKAALSNTGI PKVNVAAGAS  600
SDEQPEVDIS DEEFLQFDTS AVPVIITLTE VGRHYIVDAT PEEESHMNSA ISMSVNRKGN  660
ICGLTKRGSA GLDPSVILDM ISVGIHVSEQ LMNKLDSEIA AAEACEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2nn6_E2e-5242470418293Exosome complex exonuclease RRP42
6d6q_E2e-524247046281Exosome complex component RRP42
6d6r_E2e-524247046281Exosome complex component RRP42
6h25_E2e-524247048283Exosome complex component RRP42
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446453RRRLVYRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251479.10.0PREDICTED: transcriptional regulator STERILE APETALA isoform X1
SwissprotQ9FKH11e-142SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A164ZUT80.0A0A164ZUT8_DAUCS; Uncharacterized protein
STRINGXP_009596786.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-144SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]