PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019432

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WOX

Protein Properties

Length: 275aa MW: 30970.6 Da PI: 9.9693

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019432	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.2e-21	108	167	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le+l+++ r+p+ +++e+++++l +++ ++V++WFqN++a++++ DCAR_019432 108 TRWNPTQEQIGILERLYKEgMRTPNSQQIEQITSQLakfgKIEGKNVFYWFQNHKARQRQ 167 7***************99************************************96 PP
2	Wus_type_Homeobox	115.1	3.4e-37	108	168	4	64
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+Pt+eQi iLe+lyk+G+rtPn+++i++it++L+++Gkie+kNVfyWFQN+kaR+rqk DCAR_019432 108 TRWNPTQEQIGILERLYKEGMRTPNSQQIEQITSQLAKFGKIEGKNVFYWFQNHKARQRQK 168 8***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-12	102	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.997	103	168	IPR001356	Homeobox domain
SMART	SM00389	2.5E-6	105	172	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-19	108	167	IPR001356	Homeobox domain
CDD	cd00086	6.96E-6	108	169	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-9	109	167	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGGNMKVHQY EFPRGMLIRS WDQQSQLIES ASPASLSSFC QRFRPLLPSS HTTSGSNSST 60 AFRFDLKSFI KPHHCSSNET NVVSSGSDDK VGDHRLTQVE TTTHPGGTRW NPTQEQIGIL 120 ERLYKEGMRT PNSQQIEQIT SQLAKFGKIE GKNVFYWFQN HKARQRQKMK RRSLGLAHSP 180 RTSMATISST SSSMEDQEFE DGPLKRKRGA RSFLERSECD EMSTREDNRG VSTKFEALSD 240 GLSGLLTNST LNVQNQTLEL FPLHPEGRSR LIIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249934.1	0.0	PREDICTED: WUSCHEL-related homeobox 4 isoform X2
TrEMBL	A0A162A6M4	0.0	A0A162A6M4_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	3e-48	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	DCAR_019432