PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019077
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 566aa    MW: 62902.7 Da    PI: 4.4327
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019077genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-53141411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l+pGfrFhPtdeelv +yL++k+ +k+l++ ++i+e+diyk+ePwdLp k ++k+++ ewyfFs  dkky +g r+nrat++gyWk+tgkd++v++ +
  DCAR_019077  14 LAPGFRFHPTDEELVRYYLRRKICKKPLQV-DAISEIDIYKLEPWDLPgKsRLKSRDLEWYFFSALDKKYGNGARTNRATDRGYWKTTGKDRAVYH-R 109
                  579***************************.99***************6347777888**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+kktLv+++grap+g++++Wvmheyrl
  DCAR_019077 110 NQVVGMKKTLVYHSGRAPQGKRSNWVMHEYRL 141
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-627164IPR003441NAC domain
PROSITE profilePS5100558.52214164IPR003441NAC domain
PfamPF023652.0E-2716141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MHTTSCMDID STSLAPGFRF HPTDEELVRY YLRRKICKKP LQVDAISEID IYKLEPWDLP  60
GKSRLKSRDL EWYFFSALDK KYGNGARTNR ATDRGYWKTT GKDRAVYHRN QVVGMKKTLV  120
YHSGRAPQGK RSNWVMHEYR LVDENMEKSG YMQDAFVLCR IFQKSGSGPK NGEQYGAPYL  180
EEEWENDELA VVPKGDDQAM ELPACDGAYL DGIDLEQILN AVDSSNVAPV PANSCPWNGN  240
DCVNELINFT DNAQEACVVD DNNFIQEQPD TGAIYNLPVP YNTDGMPVKH EYLGEPSNNG  300
GQPSNTANPV NVDHIPDLSF VDATDTLQSS DGAFIETYDL QQPFDWDDSS FDMLNEYLQF  360
FDATDDNLQN MGFEYSDIFG SEEPLPDSAA LLPKKDASEG AKQENGGKQQ FDGISKDFAS  420
SSKEAQAKCQ SDSQYQFLKQ ASNLLGDISA PPALASEFPT KDATLRLNAA SASSFRVSAG  480
ILQTRHVTLG RAGVKWSYGK HDLANIVLSV GLSRGDDYSA ALQPSSGTIS ETSNSAVSWG  540
WFYYLFMWVL VLSTSFKIGT YIYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-47917012171NO APICAL MERISTEM PROTEIN
1ut4_B6e-47917012171NO APICAL MERISTEM PROTEIN
1ut7_A6e-47917012171NO APICAL MERISTEM PROTEIN
1ut7_B6e-47917012171NO APICAL MERISTEM PROTEIN
3swm_A6e-47917015174NAC domain-containing protein 19
3swm_B6e-47917015174NAC domain-containing protein 19
3swm_C6e-47917015174NAC domain-containing protein 19
3swm_D6e-47917015174NAC domain-containing protein 19
3swp_A6e-47917015174NAC domain-containing protein 19
3swp_B6e-47917015174NAC domain-containing protein 19
3swp_C6e-47917015174NAC domain-containing protein 19
3swp_D6e-47917015174NAC domain-containing protein 19
4dul_A6e-47917012171NAC domain-containing protein 19
4dul_B6e-47917012171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252137.10.0PREDICTED: NAC domain-containing protein 53-like isoform X2
TrEMBLA0A164ZF220.0A0A164ZF22_DAUCS; Uncharacterized protein
STRINGXP_009599412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-144NAC domain containing protein 2