PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 257aa MW: 28862.2 Da PI: 7.1792 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.9e-21 | 26 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+++++ r+psae+++++++kl +++ ++V++WFqN++a++++ DCAR_018901 26 HRWNPTKEQINMLENMYKQgIRTPSAEQIQDITTKLkvygHIEGKNVFYWFQNHKARQRQ 85 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.6 | 4.8e-37 | 24 | 87 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi++Le++yk+G+rtP++e+iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqkq DCAR_018901 24 STHRWNPTKEQINMLENMYKQGIRTPSAEQIQDITTKLKVYGHIEGKNVFYWFQNHKARQRQKQ 87 679***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.25E-13 | 17 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.159 | 21 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-7 | 23 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.9E-19 | 26 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-8 | 26 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.74E-6 | 26 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MESDHQIGME STISSPPSGA GSPSTHRWNP TKEQINMLEN MYKQGIRTPS AEQIQDITTK 60 LKVYGHIEGK NVFYWFQNHK ARQRQKQKQD TRMAESFSRF LQHSSPSLFP PPPCPNVVCS 120 PYYMGPGPVG FFPQCPPKLY LPPAIGKKRS QGIASDENYM GKPNFWDHGE SGDQRWRMPL 180 MRSPSNQETL ELFPMHPTGI LQEKMTPNQS PENSNVTTPA TTPSSSDTAP CFNEQEAAAA 240 DQRFFDFFRG NEEGSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251963.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 5-like | ||||
TrEMBL | A0A161YP18 | 0.0 | A0A161YP18_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11414 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-35 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018901 |