PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C2H2 | ||||||||
Protein Properties | Length: 145aa MW: 16286.8 Da PI: 9.7526 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H +H DCAR_018888 29 YECKTCSRKFPSFQALGGHRTSH 51 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F+ L H+r+H DCAR_018888 69 HECSICGMEFPLGQALGGHMRRH 91 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.9E-9 | 27 | 91 | No hit | No description |
SMART | SM00355 | 0.21 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.9E-12 | 29 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 29 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-10 | 68 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.201 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.057 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MTVKRYRADE PKSLMLLSRV GATKTDRIYE CKTCSRKFPS FQALGGHRTS HKKPMLAAGE 60 KEPVKPKTHE CSICGMEFPL GQALGGHMRR HRGAYENFSD VTERTDDDDS TKTVPVLMRS 120 NSGKRILCLD LSLRPYEIDL TLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251782.1 | 1e-104 | PREDICTED: zinc finger protein ZAT12-like | ||||
Refseq | XP_017251788.1 | 1e-104 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 4e-36 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A161XV29 | 1e-102 | A0A161XV29_DAUCS; Uncharacterized protein | ||||
STRING | cassava4.1_017982m | 3e-46 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018888 |