PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018848
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 441aa    MW: 49387.7 Da    PI: 6.5157
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018848genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-17109158155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  DCAR_018848 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 158
                  78*******************......55************************997 PP
2AP241.24e-13201250154
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  s+y+GV+ +k  g+W+A+   +   g +k+++lg f+++ eAa+a+++a+ k  
  DCAR_018848 201 SKYRGVTLHK-CGKWEARMGQF--HG-KKYIYLGLFDSEVEAARAYDKAAIKCS 250
                  89********.7******6663..33.6**********99**********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-15109167IPR016177DNA-binding domain
PfamPF008472.0E-9109158IPR001471AP2/ERF domain
CDDcd000183.72E-22110165No hitNo description
PROSITE profilePS5103217.201110166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-16110166IPR001471AP2/ERF domain
SMARTSM003801.0E-28110172IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-17201260IPR016177DNA-binding domain
CDDcd000184.58E-25201261No hitNo description
PfamPF008471.6E-8201250IPR001471AP2/ERF domain
PROSITE profilePS5103215.554202259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-16202259IPR001471AP2/ERF domain
SMARTSM003804.0E-32202265IPR001471AP2/ERF domain
PRINTSPR003674.4E-6203214IPR001471AP2/ERF domain
PRINTSPR003674.4E-6241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLDLNLGFTN IDATIMIPPE QDREEMHESF SSNTDNGCES SNAGGENGYS MNQSEFVTRQ  60
LFPVTDYDHL AECSFASDKP ISSVSVSEVP PQRQAVAKKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHSAARAYD RAAIKFRGID ADINYNLRDY EDDMEQMRSL  180
GKEEFIHILR RQSTGFARGS SKYRGVTLHK CGKWEARMGQ FHGKKYIYLG LFDSEVEAAR  240
AYDKAAIKCS GRDAVTNFEP SAYEQEMVSE RRNEGNDHNL DLNLGISTPS SENGPKENEN  300
SGHLQFISYD RMMEDRRAQI ENAVTATGGN PNLTGLPVSQ PPYMWNPANP NFFPSHEERA  360
TGKTIQVGST IVAQKWAWQV DDGEVPTNPM RINSTAASSG FLSPAINVIS PASIKPPTHY  420
YVSSASNFPH YFYQMKPNPQ *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251394.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A161XV000.0A0A161XV00_DAUCS; Uncharacterized protein
STRINGXP_009623868.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-98related to AP2.7