PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018802
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 731aa    MW: 83239.7 Da    PI: 8.7116
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018802genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19e-17489523135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C++ kTp+WR gp g+ tLCnaCG++yrk+++
  DCAR_018802 489 CTHCQAEKTPQWRAGPMGPNTLCNACGVCYRKRKH 523
                  ********************************986 PP
2GATA60.52.1e-19659693135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C+++kTp+WR+gp+g++tLCnaCG++yr+ +l
  DCAR_018802 659 CTHCQVSKTPQWREGPNGPRTLCNACGVRYRSGRL 693
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-11483533IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.174483519IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12486529No hitNo description
Gene3DG3DSA:3.30.50.102.4E-12487523IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.33E-11488523No hitNo description
PROSITE patternPS003440489514IPR000679Zinc finger, GATA-type
PfamPF003201.7E-13489523IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-17653703IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.991653689IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14657690IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-14657716No hitNo description
CDDcd002025.00E-15658705No hitNo description
PROSITE patternPS003440659684IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17659693IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MSKLPSDRTS VVTLLRNPID RFFSSYEFSI EVAARYMIYP NISSATKMSK LASKKSKAVT  60
TMDIWPWKYL VPWMRDDLFA RKEARKHKSL SYSQISDLYN AEDIVMPLIE YMRHPIALDI  120
IHNGATFQVA GLTNNSNLRE AHELRQCVIK YQRLGDHVLE VAKKRLDDML YVGLTESHNE  180
SALLFANLVG AQVISQLVEL NLSTELASNN EPAQNVSTVP DSKVYTSLHQ MTVEGLHEAF  240
KKCVPELRRV QTNRRNTSFH KIPSLNFRKE LTARILFWFE FWSMGEAGGY WDGFVNGDDS  300
FHNVINMLDF PLESVEEDKC VAEENWDAQF PSLGPFSSEI VQEFTPVFRS DFTEDVPYSF  360
IENDAASDRK LLPVTEFSST NFSLDSFHPR NLSLLQTPSQ NSVLESSSSC SAGKNLSTSC  420
ELLVPVRART KIPRSLTFTR WHLLSPLTPP RKILHSEGKE KKNMQPSQHS NEFDMKEDSY  480
PQHMPYKRCT HCQAEKTPQW RAGPMGPNTL CNACGVCYRK RKHLPTYRLI SSHSLNTEKC  540
SFTRGKEKKI NLSSEIKEDL TNQLPEDCEI AEDLTYQLPC KRCTLCNVTK TPQQREGPVC  600
NARGVRSQSG RLLRESLPSP DPEEINTKKR EKKKELSGVP NDSGAMGFAT HQPMQVRRCT  660
HCQVSKTPQW REGPNGPRTL CNACGVRYRS GRLVPEYRPA ASPTFTPYLH SNKHRKVIEM  720
RKKASSEFSV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248640.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A162A5700.0A0A162A570_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-36GATA transcription factor 11