PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 448aa MW: 50792.6 Da PI: 6.0993 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 291.9 | 1.7e-89 | 81 | 445 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 Ll++Ae ++ ++ +a++ L++ + +as +g+p+qR+ yf+ AL++r+ r ++ + + p+ + s + l + + P+ k+++++a q DCAR_018296 81 HLLTAAENLTYKQYDRASRSLTQSQSMASDTGNPVQRVSYYFAAALRERIDReTGRFTNQEGGPTGFT---SNTDLDTFYSSDQELPLSKVTQFAAVQ 175 699*************************************************4444444444555555...334444444456788************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 ++ ++v+++ +vHiiD++i G+QW aL+qaLa+R++ p l+iT+ + +++e++eetg+rL+++A+ l++pf+f+++v +++d++ e +++k DCAR_018296 176 TVIDSVANDVKVHIIDLQIRSGVQWTALMQALAKRNSCPLeLLKITATAT---TDRENVEETGKRLQRYAKFLNIPFSFKIVVIPDMKDIKEELFDIK 270 ************************************6655499*****99...68******************************************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +gE+++V + l ++ +++ +e +++++++ +P ++vv+e ea+hns+sF++rf+eal +ysa fd+le + r++e r+ +E+ +++r i+ DCAR_018296 271 TGETVVVYSPTVLTTMISRPERVEA----LMRVIRRFKPSIMVVIEVEANHNSPSFVNRFIEALFFYSAWFDCLEDCMDRNNEYRVILEKNYFSRGIQ 364 ****************966655555....********************************************************************* PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk.vk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+va+eg+er+ r + + Wre + ++ +++ ++s+ ++a l l++ ++ ++ ++++++++l+ gWk+ p++svSaWr DCAR_018296 365 NIVATEGDERVTRSVKINVWREFFARFRMEETEVSTLSLCDATLALQTqFPcGNSCTLDSNKKCLIVGWKKTPIYSVSAWR 445 *******************************************9998625677889999*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.744 | 52 | 423 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-87 | 81 | 445 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MAYNFSASGI NDSQGSYRPL ASLEYKEQKL STADIMRVAG ERYIQFSNNH LDAITMFIHP 60 YSSSLSALST EEASGADLAY HLLTAAENLT YKQYDRASRS LTQSQSMASD TGNPVQRVSY 120 YFAAALRERI DRETGRFTNQ EGGPTGFTSN TDLDTFYSSD QELPLSKVTQ FAAVQTVIDS 180 VANDVKVHII DLQIRSGVQW TALMQALAKR NSCPLELLKI TATATTDREN VEETGKRLQR 240 YAKFLNIPFS FKIVVIPDMK DIKEELFDIK TGETVVVYSP TVLTTMISRP ERVEALMRVI 300 RRFKPSIMVV IEVEANHNSP SFVNRFIEAL FFYSAWFDCL EDCMDRNNEY RVILEKNYFS 360 RGIQNIVATE GDERVTRSVK INVWREFFAR FRMEETEVST LSLCDATLAL QTQFPCGNSC 420 TLDSNKKCLI VGWKKTPIYS VSAWRFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-37 | 97 | 445 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017250980.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
TrEMBL | A0A164YYE6 | 0.0 | A0A164YYE6_DAUCS; Uncharacterized protein | ||||
STRING | Aquca_018_00004.1 | 1e-161 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 8e-57 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018296 |